Query gi|254780985|ref|YP_003065398.1| hypothetical protein CLIBASIA_04430 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:08:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780985.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n8b_A Uncharacterized protein 39.0 7.3 0.00031 19.9 0.7 20 17-36 1-22 (98)
2 3nm7_A Uncharacterized protein 19.6 26 0.0011 17.1 0.7 21 16-36 7-29 (127)
3 1f3y_A Diadenosine 5',5'''-P1, 16.5 36 0.0015 16.4 0.9 18 20-38 4-21 (165)
4 1cc1_S Hydrogenase (small subu 13.7 51 0.0022 15.7 1.1 22 1-22 1-23 (283)
5 1o7d_C Lysosomal alpha-mannosi 13.3 55 0.0023 15.5 1.1 14 23-36 135-148 (159)
6 3bt7_A TRNA (uracil-5-)-methyl 11.1 54 0.0023 15.6 0.5 11 21-31 39-49 (369)
7 3lw5_N Photosystem I-N subunit 7.4 1.2E+02 0.0051 13.8 1.1 29 18-46 21-49 (85)
8 3m0m_A L-rhamnose isomerase; b 4.7 1.6E+02 0.0069 13.1 0.5 28 18-45 127-154 (438)
9 2wsc_N PSAN, PSI-N, photosyste 4.3 2.2E+02 0.0093 12.5 0.9 29 18-46 106-134 (170)
10 2xb3_A PSBP protein; photosynt 4.2 2E+02 0.0084 12.7 0.6 10 23-32 2-11 (165)
No 1
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=38.97 E-value=7.3 Score=19.87 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=15.4
Q ss_pred CCCCCCC--CCCCCCEEEEEEE
Q ss_conf 0688667--8864201243300
Q gi|254780985|r 17 DRGNTFS--SPPEGYRTYYFGA 36 (47)
Q Consensus 17 drgntfs--sppegyrtyyfga 36 (47)
+||.-|| ...+|-|||+|..
T Consensus 1 er~Ei~s~kv~~agkRTYFFDV 22 (98)
T 3n8b_A 1 ERGEVYSEKMFTESERTYFMNV 22 (98)
T ss_dssp CTTEEEEEEECCSSSEEEEEEE
T ss_pred CCCHHHHHHHHHCCCEEEEEEE
T ss_conf 9620456766425862699983
No 2
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=19.57 E-value=26 Score=17.12 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=15.6
Q ss_pred ECCCCCCCC--CCCCCEEEEEEE
Q ss_conf 506886678--864201243300
Q gi|254780985|r 16 LDRGNTFSS--PPEGYRTYYFGA 36 (47)
Q Consensus 16 ldrgntfss--ppegyrtyyfga 36 (47)
-+|+.-||+ ...|-|||||..
T Consensus 7 g~r~ei~s~kv~~agkRtYFFDV 29 (127)
T 3nm7_A 7 GERGEVYSEKLFTESERTYFFNV 29 (127)
T ss_dssp -CTTEEEEEEECCSSSEEEEEEE
T ss_pred CCCCCHHHHHHHHCCCEEEEEEE
T ss_conf 51101134767536862698982
No 3
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=16.46 E-value=36 Score=16.43 Aligned_cols=18 Identities=50% Similarity=1.141 Sum_probs=10.9
Q ss_pred CCCCCCCCCCEEEEEEEHH
Q ss_conf 8667886420124330000
Q gi|254780985|r 20 NTFSSPPEGYRTYYFGACV 38 (47)
Q Consensus 20 ntfssppegyrtyyfgacv 38 (47)
.+.++||+|||.- -|+.+
T Consensus 4 ~~~~~~p~~yR~~-Vgvvi 21 (165)
T 1f3y_A 4 GSMDSPPEGYRRN-VGICL 21 (165)
T ss_dssp CCCSSCCSSCCCE-EEEEE
T ss_pred CCCCCCCCCCCCC-EEEEE
T ss_conf 7456999886664-79999
No 4
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=13.66 E-value=51 Score=15.65 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=15.3
Q ss_pred CCCCCCCCCEEEEEEEC-CCCCC
Q ss_conf 98765588458999850-68866
Q gi|254780985|r 1 MTKGKKKPDIIRLEYLD-RGNTF 22 (47)
Q Consensus 1 mtkgkkkpdiirleyld-rgntf 22 (47)
||.++|||.||-|+... -|++.
T Consensus 1 ~~~~~~kp~VvWl~~~~C~GCsi 23 (283)
T 1cc1_S 1 MTEGAKKAPVIWVQGQGCTGCSV 23 (283)
T ss_dssp -----CCEEEEEEESBCCSHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHH
T ss_conf 98878999889873887876699
No 5
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=13.34 E-value=55 Score=15.51 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.1
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 78864201243300
Q gi|254780985|r 23 SSPPEGYRTYYFGA 36 (47)
Q Consensus 23 ssppegyrtyyfga 36 (47)
+-||-||++|++-.
T Consensus 135 ~vP~lG~~~y~i~~ 148 (159)
T 1o7d_C 135 LVPAVGFSIYSVSQ 148 (159)
T ss_dssp EECTTEEEEEEEEE
T ss_pred EECCCCCEEEEEEE
T ss_conf 73787448999998
No 6
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=11.13 E-value=54 Score=15.55 Aligned_cols=11 Identities=45% Similarity=0.772 Sum_probs=9.0
Q ss_pred CCCCCCCCCEE
Q ss_conf 66788642012
Q gi|254780985|r 21 TFSSPPEGYRT 31 (47)
Q Consensus 21 tfssppegyrt 31 (47)
.++|||.|||+
T Consensus 39 v~~sp~~~YRn 49 (369)
T 3bt7_A 39 VFRSPVSHYRM 49 (369)
T ss_dssp EECCCSSSCBS
T ss_pred CCCCCCCCCCC
T ss_conf 35898767864
No 7
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Phaseolus vulgaris} PDB: 2o01_N*
Probab=7.43 E-value=1.2e+02 Score=13.79 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCEEEEEEEHHHCCHHCCC
Q ss_conf 68866788642012433000000002003
Q gi|254780985|r 18 RGNTFSSPPEGYRTYYFGACVHHKRFIRC 46 (47)
Q Consensus 18 rgntfssppegyrtyyfgacvhhkrfirc 46 (47)
|-.|-+.--+--||-+||.|-....|.-|
T Consensus 21 RlaTS~ANfaRs~tV~~g~C~fP~Nf~GC 49 (85)
T 3lw5_N 21 RLATTGANFARAYTVEFGSCKFPENFTGC 49 (85)
T ss_dssp SCCSSSSSSTTTSSCCCSCSSCCSCCSCS
T ss_pred HHHHCCCCHHHEEEEECCCCCCCCCCCCH
T ss_conf 76613435321467533620277321117
No 8
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A*
Probab=4.75 E-value=1.6e+02 Score=13.14 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCEEEEEEEHHHCCHHCC
Q ss_conf 6886678864201243300000000200
Q gi|254780985|r 18 RGNTFSSPPEGYRTYYFGACVHHKRFIR 45 (47)
Q Consensus 18 rgntfssppegyrtyyfgacvhhkrfir 45 (47)
-.|+||-|+.+-.+|-+|+-.|-..=+|
T Consensus 127 n~n~Fsd~~~~~~~yk~GsLTnPD~~VR 154 (438)
T 3m0m_A 127 NSNTFSDAPGQAHSYKYGSLSHTNAATR 154 (438)
T ss_dssp ECCCSSCCTTCSSCCTTCSTTCSSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 5410157754334204576779599999
No 9
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N* 2o01_N*
Probab=4.26 E-value=2.2e+02 Score=12.49 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCEEEEEEEHHHCCHHCCC
Q ss_conf 68866788642012433000000002003
Q gi|254780985|r 18 RGNTFSSPPEGYRTYYFGACVHHKRFIRC 46 (47)
Q Consensus 18 rgntfssppegyrtyyfgacvhhkrfirc 46 (47)
|--|-+.--+--||-+||.|-....|.-|
T Consensus 106 R~aTs~ANfaRa~tV~~G~C~fP~Nf~GC 134 (170)
T 2wsc_N 106 RLATTGANFARAYTVEFGSCKFPENFTGC 134 (170)
T ss_dssp SCCSSSSSSCSCTTCCCSCSSCCSCCSCS
T ss_pred HHHHCCCCHHHEEEEECCCCCCCCCCCCH
T ss_conf 66503435332367532521487432017
No 10
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=4.23 E-value=2e+02 Score=12.72 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=0.0
Q ss_pred CCCCCCCEEE
Q ss_conf 7886420124
Q gi|254780985|r 23 SSPPEGYRTY 32 (47)
Q Consensus 23 ssppegyrty 32 (47)
||+|+|+++|
T Consensus 2 ~~~~~G~~~y 11 (165)
T 2xb3_A 2 SSATSGLQAY 11 (165)
T ss_dssp ----CCEEEE
T ss_pred CCCCCCCEEE
T ss_conf 9888887797
Done!