Query gi|254780985|ref|YP_003065398.1| hypothetical protein CLIBASIA_04430 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:56:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780985.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jkna_ d.113.1.1 (A:) Diadeno 23.0 13 0.00094 17.5 1.0 19 20-39 4-22 (165)
2 d1vhza_ d.113.1.1 (A:) ADP com 7.4 89 0.0065 13.3 2.6 24 1-24 2-25 (186)
3 d1o6wa1 b.72.1.1 (A:1-29) Spli 5.8 90 0.0065 13.3 0.9 11 26-37 10-20 (29)
4 d1na6a2 c.52.1.22 (A:179-398) 5.4 63 0.0046 14.0 -0.1 11 2-12 114-124 (220)
5 d1o6wa2 b.72.1.1 (A:30-75) Spl 4.6 1.2E+02 0.0086 12.7 0.9 11 26-37 22-32 (46)
6 d1ccwa_ c.23.6.1 (A:) Glutamat 3.9 1.3E+02 0.0098 12.4 0.8 19 27-45 30-48 (137)
7 d1ataa_ g.22.1.1 (A:) Ascaris 3.8 1.1E+02 0.0079 12.8 0.2 18 23-40 40-57 (62)
8 d2b7oa1 c.1.10.8 (A:1-462) Pro 3.8 1.2E+02 0.0086 12.7 0.4 21 17-38 368-388 (462)
9 d1rk8b_ d.232.1.1 (B:) Mago na 3.5 52 0.0038 14.4 -1.7 13 22-34 110-122 (141)
10 d2nwaa1 b.122.1.13 (A:1-80) Hy 3.4 83 0.006 13.4 -0.7 16 19-34 22-37 (80)
No 1
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}
Probab=22.96 E-value=13 Score=17.45 Aligned_cols=19 Identities=47% Similarity=1.058 Sum_probs=12.5
Q ss_pred CCCCCCCCCCEEEEEEEHHH
Q ss_conf 86678864201243300000
Q gi|254780985|r 20 NTFSSPPEGYRTYYFGACVH 39 (47)
Q Consensus 20 ntfssppegyrtyyfgacvh 39 (47)
.+.++||+|||. -.|+.+.
T Consensus 4 ~~~~~~~~~yR~-~Vg~vI~ 22 (165)
T d1jkna_ 4 GSMDSPPEGYRR-NVGICLM 22 (165)
T ss_dssp CCCSSCCSSEEE-EEEEEEE
T ss_pred CCCCCCCCCCCC-CEEEEEE
T ss_conf 745799877656-5899999
No 2
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}
Probab=7.36 E-value=89 Score=13.27 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.1
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 987655884589998506886678
Q gi|254780985|r 1 MTKGKKKPDIIRLEYLDRGNTFSS 24 (47)
Q Consensus 1 mtkgkkkpdiirleyldrgntfss 24 (47)
|.+..+||.|+.-+.+-+|.-|+-
T Consensus 2 m~~~~~k~~il~~~~v~~~~~f~v 25 (186)
T d1vhza_ 2 LSKSLQKPTILNVETVARSRLFTV 25 (186)
T ss_dssp CCCCCCCCEEEEEEEEEECSSCEE
T ss_pred CCCCCCCCEEEEEEEEEECCEEEE
T ss_conf 876576987810389986887999
No 3
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.76 E-value=90 Score=13.26 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.1
Q ss_pred CCCCEEEEEEEH
Q ss_conf 642012433000
Q gi|254780985|r 26 PEGYRTYYFGAC 37 (47)
Q Consensus 26 pegyrtyyfgac 37 (47)
|+| |+||+..-
T Consensus 10 ~~G-~~YYyN~~ 20 (29)
T d1o6wa1 10 ASG-RIYYYNTL 20 (29)
T ss_dssp TTC-CEEEEETT
T ss_pred CCC-CEEEEECC
T ss_conf 899-98875899
No 4
>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.36 E-value=63 Score=14.03 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=7.9
Q ss_pred CCCCCCCCEEE
Q ss_conf 87655884589
Q gi|254780985|r 2 TKGKKKPDIIR 12 (47)
Q Consensus 2 tkgkkkpdiir 12 (47)
|.++||||.+-
T Consensus 114 te~~kkpDFlf 124 (220)
T d1na6a2 114 TEGNKKPDFLF 124 (220)
T ss_dssp ------CCCCB
T ss_pred CCCCCCCCEEC
T ss_conf 26899897446
No 5
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.58 E-value=1.2e+02 Score=12.65 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=7.2
Q ss_pred CCCCEEEEEEEH
Q ss_conf 642012433000
Q gi|254780985|r 26 PEGYRTYYFGAC 37 (47)
Q Consensus 26 pegyrtyyfgac 37 (47)
|+| |+||+..-
T Consensus 22 ~~G-r~YYyN~~ 32 (46)
T d1o6wa2 22 ADG-KVYYYNPT 32 (46)
T ss_dssp TTC-CEEEEETT
T ss_pred CCC-CEEEEECC
T ss_conf 999-98877899
No 6
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=3.92 E-value=1.3e+02 Score=12.37 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=13.6
Q ss_pred CCCEEEEEEEHHHCCHHCC
Q ss_conf 4201243300000000200
Q gi|254780985|r 27 EGYRTYYFGACVHHKRFIR 45 (47)
Q Consensus 27 egyrtyyfgacvhhkrfir 45 (47)
.||.+.|.|+++-...|+.
T Consensus 30 ~G~~V~~LG~~~p~e~iv~ 48 (137)
T d1ccwa_ 30 AGFNVVNIGVLSPQELFIK 48 (137)
T ss_dssp TTCEEEEEEEEECHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
T ss_conf 8976772234569999999
No 7
>d1ataa_ g.22.1.1 (A:) Ascaris trypsin inhibitor, ATI {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=3.84 E-value=1.1e+02 Score=12.84 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=14.2
Q ss_pred CCCCCCCEEEEEEEHHHC
Q ss_conf 788642012433000000
Q gi|254780985|r 23 SSPPEGYRTYYFGACVHH 40 (47)
Q Consensus 23 ssppegyrtyyfgacvhh 40 (47)
-+|-.|||---+|-||+-
T Consensus 40 C~~~~g~rR~~~GkCI~~ 57 (62)
T d1ataa_ 40 CIASAGFVRDAQGNCIKF 57 (62)
T ss_dssp CCTTTTEEEETTTEEEES
T ss_pred CCCCCCEEECCCCCEEEC
T ss_conf 254558157699878862
No 8
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.82 E-value=1.2e+02 Score=12.65 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCEEEEEEEHH
Q ss_conf 0688667886420124330000
Q gi|254780985|r 17 DRGNTFSSPPEGYRTYYFGACV 38 (47)
Q Consensus 17 drgntfssppegyrtyyfgacv 38 (47)
-.|||+.++ .||.|-.|..-+
T Consensus 368 MHGNT~~s~-~G~KTR~f~~Il 388 (462)
T d2b7oa1 368 MHGNTHESS-TGFKTRHFDRIV 388 (462)
T ss_dssp STTSEEECT-TSCEEECHHHHH
T ss_pred CCCCCEECC-CCCCCCCHHHHH
T ss_conf 767740279-985067789999
No 9
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.49 E-value=52 Score=14.44 Aligned_cols=13 Identities=46% Similarity=0.984 Sum_probs=9.3
Q ss_pred CCCCCCCCEEEEE
Q ss_conf 6788642012433
Q gi|254780985|r 22 FSSPPEGYRTYYF 34 (47)
Q Consensus 22 fssppegyrtyyf 34 (47)
-|.-|||.|++|+
T Consensus 110 ~S~DPeGLr~Fyy 122 (141)
T d1rk8b_ 110 RSKDPEGLRCFYY 122 (141)
T ss_dssp TSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 6789107789999
No 10
>d2nwaa1 b.122.1.13 (A:1-80) Hypothetical protein YtmB {Bacillus subtilis [TaxId: 1423]}
Probab=3.38 E-value=83 Score=13.43 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCEEEEE
Q ss_conf 8866788642012433
Q gi|254780985|r 19 GNTFSSPPEGYRTYYF 34 (47)
Q Consensus 19 gntfssppegyrtyyf 34 (47)
.|.|.---||||-|-.
T Consensus 22 en~f~l~keGYriyPi 37 (80)
T d2nwaa1 22 ENIFTLEKDGYRVYPM 37 (80)
T ss_dssp SSEEEEEEESCEECCS
T ss_pred CCEEEEEECCEEEEEC
T ss_conf 1289986373699763
Done!