Query gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 19:53:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780986.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2jx0_A ARF GTPase-activating 47.7 21 0.00061 17.0 3.4 27 55-81 104-130 (135)
2 >1zw2_B Talin, metavinculin; c 27.5 35 0.001 15.8 1.9 18 63-80 2-19 (26)
3 >3hun_A Penicillin-binding pro 24.8 18 0.00053 17.4 0.0 33 2-35 84-116 (117)
4 >3cm8_B Peptide from RNA-direc 18.3 22 0.00066 16.8 -0.6 14 47-60 3-16 (30)
5 >2cx0_A Hypothetical protein A 15.3 44 0.0013 15.2 0.3 21 53-73 77-99 (104)
6 >2b6c_A Hypothetical protein E 9.9 1.3E+02 0.0038 12.6 2.5 50 33-82 27-76 (97)
7 >2ixo_A Serine/threonine-prote 8.7 1.4E+02 0.0042 12.3 1.8 26 64-89 67-99 (122)
8 >1g92_A Poneratoxin, PAC-TX; n 7.1 1.5E+02 0.0044 12.2 0.7 17 48-66 8-24 (26)
9 >1c1k_A BPT4 gene 59 helicase 6.9 1.7E+02 0.0051 11.8 2.0 19 17-35 6-24 (96)
10 >1yrt_A Bifunctional hemolysin 6.7 1.8E+02 0.0052 11.8 1.3 15 59-73 35-49 (58)
No 1
>>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} (A:)
Probab=47.67 E-value=21 Score=17.02 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 226666678998877755558999972
Q gi|254780986|r 55 TLLLLQGIHDALWDIAKATSALVFLYG 81 (94)
Q Consensus 55 tllllqgihdalwdiakatsalvflyg 81 (94)
--+..|-+-+.-+|||||+--||-.|-
T Consensus 104 iq~~tqqVi~cAydIAkAaK~LVT~f~ 130 (135)
T 2jx0_A 104 FQLLTQQVIQCAYDIAKAAKQLVTITT 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999978886643
No 2
>>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus} (B:)
Probab=27.54 E-value=35 Score=15.76 Aligned_cols=18 Identities=50% Similarity=0.283 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899887775555899997
Q gi|254780986|r 63 HDALWDIAKATSALVFLY 80 (94)
Q Consensus 63 hdalwdiakatsalvfly 80 (94)
-+|--.||.||||||---
T Consensus 2 leaaksiaaatsalvkaa 19 (26)
T 1zw2_B 2 LEAAKSIAAATSALVKAA 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 078998999999999998
No 3
>>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:337-453)
Probab=24.79 E-value=18 Score=17.38 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7541568986342789999999999999999765
Q gi|254780986|r 2 NSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRT 35 (94)
Q Consensus 2 nslplfgwmagigclgisialvylyihqhfkkrt 35 (94)
++.|.+. +-+.+|+.+.++++-.+|-.++.+|.
T Consensus 84 ~~~p~~~-~v~l~ll~i~~i~ii~~i~~~~~rk~ 116 (117)
T 3hun_A 84 EEHPLFT-IIGGTCLVAGLALIVHMIINRLFRKR 116 (117)
T ss_dssp ----------------------------------
T ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0047299-99999999999999999999986026
No 4
>>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus} (B:)
Probab=18.29 E-value=22 Score=16.84 Aligned_cols=14 Identities=57% Similarity=0.895 Sum_probs=12.0
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 37654274226666
Q gi|254780986|r 47 KGSMKKDPTLLLLQ 60 (94)
Q Consensus 47 kgsmkkdptllllq 60 (94)
-|||.-.||||.|.
T Consensus 3 lgsMdvnptllflk 16 (30)
T 3cm8_B 3 LGSMDVNPTLLFLK 16 (30)
T ss_pred CCCCCCCCEEEEEE
T ss_conf 55334586789996
No 5
>>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} (A:1-89,A:173-187)
Probab=15.30 E-value=44 Score=15.20 Aligned_cols=21 Identities=48% Similarity=0.863 Sum_probs=14.8
Q ss_pred CCHHHHH--HHHHHHHHHHHHHH
Q ss_conf 7422666--66789988777555
Q gi|254780986|r 53 DPTLLLL--QGIHDALWDIAKAT 73 (94)
Q Consensus 53 dptllll--qgihdalwdiakat 73 (94)
-|||--| -|+.||||+.|...
T Consensus 77 yptlqclkafgvddalwelaqev 99 (104)
T 2cx0_A 77 YPTLQCLKAFGVDDALWELAQEV 99 (104)
T ss_dssp EECHHHHHHHCSTSHHHHHHHHH
T ss_pred EEEHHHHHHCCCCCHHEECCHHH
T ss_conf 63378897677452220215412
No 6
>>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, PSI, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} (A:124-220)
Probab=9.86 E-value=1.3e+02 Score=12.58 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76564443355310376542742266666789988777555589999727
Q gi|254780986|r 33 KRTKQKKVDIAFKKKGSMKKDPTLLLLQGIHDALWDIAKATSALVFLYGA 82 (94)
Q Consensus 33 krtkqkkvdiafkkkgsmkkdptllllqgihdalwdiakatsalvflyga 82 (94)
...++...|.+|.--.....||.-..-.+|--+|-|++|.-...|..|-.
T Consensus 27 ~~~~~~~~~~~~~~~~~l~~D~~~~Vqkavgw~Lre~~k~~p~~v~~~l~ 76 (97)
T 2b6c_A 27 XLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELXK 76 (97)
T ss_dssp TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 98877698999999998378909999999999999998679999999998
No 7
>>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} (A:202-323)
Probab=8.68 E-value=1.4e+02 Score=12.31 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=20.4
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q ss_conf 9988777-------5555899997277887656
Q gi|254780986|r 64 DALWDIA-------KATSALVFLYGASLLCKTI 89 (94)
Q Consensus 64 dalwdia-------katsalvflygasllckti 89 (94)
--||||+ |..+.|...|-+..|+|--
T Consensus 67 p~L~~Is~~v~~W~Kv~~GL~KMY~~EVL~Kfp 99 (122)
T 2ixo_A 67 PILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFP 99 (122)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 689988751798088999999999999720687
No 8
>>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} (A:)
Probab=7.05 E-value=1.5e+02 Score=12.19 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=10.2
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 7654274226666678998
Q gi|254780986|r 48 GSMKKDPTLLLLQGIHDAL 66 (94)
Q Consensus 48 gsmkkdptllllqgihdal 66 (94)
||.--.|. ..|.||||-
T Consensus 8 gsllmtpp--viqaihdaq 24 (26)
T 1g92_A 8 GSLLMTPP--VIQAIHDAQ 24 (26)
T ss_dssp HTCSSSCC--TTTHHHHHH
T ss_pred HHHHCCCH--HHHHHHHHH
T ss_conf 87753728--999987751
No 9
>>1c1k_A BPT4 gene 59 helicase assembly protein; DNA replication, DNA recombination, forked DNA; 1.45A {Bacteriophage T4} (A:11-106)
Probab=6.93 E-value=1.7e+02 Score=11.84 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999765
Q gi|254780986|r 17 GISIALVYLYIHQHFKKRT 35 (94)
Q Consensus 17 gisialvylyihqhfkkrt 35 (94)
|+|.--+||-+.|||.++-
T Consensus 6 ~~~vy~lYL~~K~Hf~gkY 24 (96)
T 1c1k_A 6 GKSVYKLYLMIKQHMNGKY 24 (96)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 5999999999998558877
No 10
>>1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A (A:200-257)
Probab=6.72 E-value=1.8e+02 Score=11.78 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 666789988777555
Q gi|254780986|r 59 LQGIHDALWDIAKAT 73 (94)
Q Consensus 59 lqgihdalwdiakat 73 (94)
-..--|-||.||.|.
T Consensus 35 dreridllwkiarag 49 (58)
T 1yrt_A 35 DRERIDLLWKIARAG 49 (58)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCC
T ss_conf 600010566530000
Done!