Query gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:59:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780986.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b3ta1 c.66.1.30 (A:2-275) N5 6.8 71 0.0052 11.8 1.2 16 9-24 115-130 (274)
2 d1unld_ a.74.1.1 (D:) CDK5 act 6.7 39 0.0028 13.3 -0.5 26 57-89 41-67 (150)
3 d2j8cl1 f.26.1.1 (L:1-281) L ( 3.7 1.2E+02 0.0085 10.6 1.8 13 75-87 176-188 (281)
4 d1eysl_ f.26.1.1 (L:) L (light 3.5 1.2E+02 0.0089 10.5 1.8 13 75-87 184-196 (280)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 3.4 1.3E+02 0.0092 10.4 2.4 19 6-24 3-21 (27)
6 d1yeya2 d.54.1.1 (A:2-140) RTS 3.2 1.3E+02 0.0095 10.3 1.7 15 57-71 110-124 (139)
7 d2i5nl1 f.26.1.1 (L:1-273) L ( 3.1 1.3E+02 0.0097 10.3 1.8 13 75-87 176-188 (273)
8 d1sqwa1 b.122.1.1 (A:95-170) N 3.1 83 0.0061 11.4 -0.9 16 71-86 6-21 (76)
9 d1y7ma2 d.7.1.1 (A:1-48) Hypot 2.8 1.2E+02 0.0088 10.5 -0.4 8 64-71 10-17 (48)
10 d1q90m_ f.23.25.1 (M:) PetM su 2.8 1.5E+02 0.011 10.1 2.9 19 10-28 12-30 (34)
No 1
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}
Probab=6.80 E-value=71 Score=11.80 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9863427899999999
Q gi|254780986|r 9 WMAGIGCLGISIALVY 24 (94)
Q Consensus 9 wmagigclgisialvy 24 (94)
.-.|-||+++++|..+
T Consensus 115 lGtGSG~I~i~la~~~ 130 (274)
T d2b3ta1 115 LGTGTGAIALALASER 130 (274)
T ss_dssp ETCTTSHHHHHHHHHC
T ss_pred EEHHHHHHHHHHHHHC
T ss_conf 3202467788887508
No 2
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.71 E-value=39 Score=13.29 Aligned_cols=26 Identities=50% Similarity=0.913 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 66666789988777555-5899997277887656
Q gi|254780986|r 57 LLLQGIHDALWDIAKAT-SALVFLYGASLLCKTI 89 (94)
Q Consensus 57 lllqgihdalwdiakat-salvflygasllckti 89 (94)
|||||-.| +|--+ ..+||+| +||+..
T Consensus 41 LLLQGWQD----~~Fi~PaNvVFvY---mL~Re~ 67 (150)
T d1unld_ 41 LLLQGWQD----QGFITPANVVFLY---MLCRDV 67 (150)
T ss_dssp HHHTTSCS----SCSCCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHH----CCCCCCCCEEEHH---HHHHHH
T ss_conf 99721123----1555753110049---999986
No 3
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.71 E-value=1.2e+02 Score=10.60 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999972778876
Q gi|254780986|r 75 ALVFLYGASLLCK 87 (94)
Q Consensus 75 alvflygasllck 87 (94)
+.+|+||..|+|-
T Consensus 176 sI~fl~gsaLl~A 188 (281)
T d2j8cl1 176 AISFFFTNALALA 188 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998799998
No 4
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.49 E-value=1.2e+02 Score=10.48 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999972778876
Q gi|254780986|r 75 ALVFLYGASLLCK 87 (94)
Q Consensus 75 alvflygasllck 87 (94)
+.+|+||..|+|-
T Consensus 184 sIaflygsall~A 196 (280)
T d1eysl_ 184 AISFFFTNCLALS 196 (280)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998699999
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.37 E-value=1.3e+02 Score=10.41 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5689863427899999999
Q gi|254780986|r 6 LFGWMAGIGCLGISIALVY 24 (94)
Q Consensus 6 lfgwmagigclgisialvy 24 (94)
..||.+-.-...-|||.|.
T Consensus 3 ~lgwv~llvvftwsiamvv 21 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHEEEEEE
T ss_conf 0457588887632234688
No 6
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=3.21 E-value=1.3e+02 Score=10.32 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 666667899887775
Q gi|254780986|r 57 LLLQGIHDALWDIAK 71 (94)
Q Consensus 57 lllqgihdalwdiak 71 (94)
--+-+|.-||||+.-
T Consensus 110 ~A~saIDiALWDl~g 124 (139)
T d1yeya2 110 MAIGAVINAAWDLAA 124 (139)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999988
No 7
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.12 E-value=1.3e+02 Score=10.27 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999972778876
Q gi|254780986|r 75 ALVFLYGASLLCK 87 (94)
Q Consensus 75 alvflygasllck 87 (94)
+.+|+||..|+|-
T Consensus 176 sI~fl~gsaLl~A 188 (273)
T d2i5nl1 176 SVSFLFVNAMALG 188 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998799999
No 8
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.10 E-value=83 Score=11.43 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5555899997277887
Q gi|254780986|r 71 KATSALVFLYGASLLC 86 (94)
Q Consensus 71 katsalvflygasllc 86 (94)
|..+..-||||...+-
T Consensus 6 Kp~~E~~FLYGn~VlK 21 (76)
T d1sqwa1 6 KPGAEQSFLYGNHVLK 21 (76)
T ss_dssp CHHHHHHHTTTCCEEG
T ss_pred CCCCCCCEEECCCHHH
T ss_conf 6785153004353203
No 9
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.81 E-value=1.2e+02 Score=10.50 Aligned_cols=8 Identities=50% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99887775
Q gi|254780986|r 64 DALWDIAK 71 (94)
Q Consensus 64 dalwdiak 71 (94)
|.||.||+
T Consensus 10 DTL~~IA~ 17 (48)
T d1y7ma2 10 DTLNSIAA 17 (48)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
T ss_conf 89999998
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.79 E-value=1.5e+02 Score=10.05 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8634278999999999999
Q gi|254780986|r 10 MAGIGCLGISIALVYLYIH 28 (94)
Q Consensus 10 magigclgisialvylyih 28 (94)
|.|+.-+|..|..|.|-..
T Consensus 12 mig~tl~glaigfvllrve 30 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLRVE 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHEEEH
T ss_conf 9989999998877500207
Done!