BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] (94 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] gi|254040663|gb|ACT57459.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] Length = 94 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/94 (100%), Positives = 94/94 (100%) Query: 1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ 60 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ Sbjct: 1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ 60 Query: 61 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI 94 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI Sbjct: 61 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI 94 >gi|229176524|ref|ZP_04303953.1| hypothetical protein bcere0006_55390 [Bacillus cereus MM3] gi|228606961|gb|EEK64354.1| hypothetical protein bcere0006_55390 [Bacillus cereus MM3] Length = 133 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 5 PLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDI 42 P+ G+ +G LG+++ V +YI Q KK+ K+K VD+ Sbjct: 82 PVVGYADDLGGLGVALMQVVMYIDQDVKKQAKEKLVDL 119 Searching..................................................done Results from round 2 CONVERGED! >gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] gi|254040663|gb|ACT57459.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] Length = 94 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 94/94 (100%), Positives = 94/94 (100%) Query: 1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ 60 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ Sbjct: 1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQ 60 Query: 61 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI 94 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI Sbjct: 61 GIHDALWDIAKATSALVFLYGASLLCKTIIYWRI 94 >gi|229176524|ref|ZP_04303953.1| hypothetical protein bcere0006_55390 [Bacillus cereus MM3] gi|228606961|gb|EEK64354.1| hypothetical protein bcere0006_55390 [Bacillus cereus MM3] Length = 133 Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 5 PLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDI 42 P+ G+ +G LG+++ V +YI Q KK+ K+K VD+ Sbjct: 82 PVVGYADDLGGLGVALMQVVMYIDQDVKKQAKEKLVDL 119 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.328 0.142 0.451 Lambda K H 0.267 0.0462 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,153,822,995 Number of Sequences: 14124377 Number of extensions: 87429046 Number of successful extensions: 389297 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 389291 Number of HSP's gapped (non-prelim): 11 length of query: 94 length of database: 4,842,793,630 effective HSP length: 64 effective length of query: 30 effective length of database: 3,938,833,502 effective search space: 118165005060 effective search space used: 118165005060 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 76 (33.7 bits)