RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780986|ref|YP_003065399.1| hypothetical protein
CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>2ox0_A JMJC domain-containing histone demethylation protein 3A;
           double-stranded beta helix, demethylase, oxygenase, SGC,
           structural genomics, structural genomics consortium,
           oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens}
           PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2p5b_A*
           2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2pxj_A* (A:)
          Length = 381

 Score = 25.3 bits (53), Expect = 3.2
 Identities = 10/64 (15%), Positives = 18/64 (28%)

Query: 8   GWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQGIHDALW 67
                    G + A    +  + + +  KQ  +    K    +  D  +   Q     LW
Sbjct: 295 YGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYKLW 354

Query: 68  DIAK 71
              K
Sbjct: 355 KAGK 358


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 719,865
Number of extensions: 25923
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 4,956,049
Length adjustment: 54
Effective length of query: 40
Effective length of database: 3,130,579
Effective search space: 125223160
Effective search space used: 125223160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)