RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780986|ref|YP_003065399.1| hypothetical protein
CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.093
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 39/99 (39%)

Query: 3   SLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGSMKKDPTLL--LL- 59
           S PL      IG + I +A        H+          +  K    +   P  L   L 
Sbjct: 237 SCPL------IG-V-IQLA--------HYV---------VTAK---LLGFTPGELRSYLK 268

Query: 60  ------QGIHDALWDIAKATSALVFLYGASLLCKTIIYW 92
                 QG+  A+  IA+  S   F + +     T++++
Sbjct: 269 GATGHSQGLVTAVA-IAETDSWESF-FVSVRKAITVLFF 305


>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain
           homologue, ANK repeat, cytoplasm, GTPase activation,
           metal-binding; NMR {Rattus norvegicus}
          Length = 135

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 57  LLLQGIHDALWDIAKATSALV 77
           LL Q +    +DIAKA   LV
Sbjct: 106 LLTQQVIQCAYDIAKAAKQLV 126


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 818,441
Number of extensions: 31082
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 5,693,230
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,214,346
Effective search space: 139073418
Effective search space used: 139073418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)