Query gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 110 No_of_seqs 22 out of 24 Neff 3.0 Searched_HMMs 23785 Date Tue May 31 23:21:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780987.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3b73_A PHIH1 repressor-like pr 92.3 0.16 6.8E-06 28.2 4.6 57 21-80 25-84 (111) 2 2h09_A Transcriptional regulat 90.5 0.22 9.4E-06 27.5 3.8 53 20-77 51-106 (155) 3 1fx7_A Iron-dependent represso 88.9 0.39 1.7E-05 26.1 4.1 53 20-77 21-76 (230) 4 3hrs_A Metalloregulator SCAR; 87.4 0.6 2.5E-05 25.1 4.2 54 19-77 16-72 (214) 5 1on2_A Transcriptional regulat 86.9 0.56 2.4E-05 25.3 3.8 53 20-77 19-74 (142) 6 1ub9_A Hypothetical protein PH 86.1 0.42 1.8E-05 26.0 2.9 60 21-82 28-93 (100) 7 2qq9_A Diphtheria toxin repres 85.5 0.79 3.3E-05 24.5 4.0 53 20-77 21-76 (226) 8 3cta_A Riboflavin kinase; stru 85.2 0.82 3.4E-05 24.4 4.0 60 17-78 21-83 (230) 9 3hsr_A HTH-type transcriptiona 84.1 0.5 2.1E-05 25.5 2.5 75 5-79 32-110 (140) 10 2gxg_A 146AA long hypothetical 83.6 0.63 2.6E-05 25.0 2.8 73 5-80 33-111 (146) 11 2x4h_A Hypothetical protein SS 82.0 1.4 5.9E-05 23.1 4.1 60 10-76 19-81 (139) 12 3eco_A MEPR; mutlidrug efflux 78.3 1.1 4.5E-05 23.7 2.5 73 5-79 27-107 (139) 13 3nrv_A Putative transcriptiona 77.9 1.2 4.9E-05 23.6 2.6 75 5-81 36-116 (148) 14 3g3z_A NMB1585, transcriptiona 77.6 0.99 4.2E-05 23.9 2.2 72 6-79 28-105 (145) 15 3bro_A Transcriptional regulat 77.6 0.95 4E-05 24.0 2.0 72 6-79 31-110 (141) 16 3k0l_A Repressor protein; heli 75.7 2.1 9E-05 22.1 3.4 73 5-77 42-118 (162) 17 2fxa_A Protease production reg 74.8 0.7 3E-05 24.8 0.8 81 5-85 44-128 (207) 18 2bv6_A MGRA, HTH-type transcri 74.1 2.4 0.0001 21.8 3.4 74 6-79 34-111 (142) 19 3kp7_A Transcriptional regulat 73.2 2.5 0.00011 21.7 3.3 59 20-79 49-113 (151) 20 2nyx_A Probable transcriptiona 73.1 2.7 0.00011 21.6 3.4 58 21-78 57-118 (168) 21 3bja_A Transcriptional regulat 72.6 3 0.00013 21.3 3.6 58 22-79 46-107 (139) 22 2eth_A Transcriptional regulat 71.9 3.6 0.00015 20.9 3.8 55 23-79 58-118 (154) 23 2fa5_A Transcriptional regulat 71.4 1.7 6.9E-05 22.7 2.0 59 21-81 61-125 (162) 24 3bpv_A Transcriptional regulat 71.4 3.1 0.00013 21.2 3.4 60 20-81 40-105 (138) 25 1yg2_A Gene activator APHA; vi 71.1 2.7 0.00012 21.5 3.1 60 24-83 16-89 (179) 26 2a61_A Transcriptional regulat 68.8 1.6 6.5E-05 22.9 1.4 72 6-79 30-107 (145) 27 2qww_A Transcriptional regulat 68.0 2 8.4E-05 22.3 1.8 71 5-77 37-115 (154) 28 1jgs_A Multiple antibiotic res 66.7 6 0.00025 19.7 4.1 57 20-78 45-107 (138) 29 2hr3_A Probable transcriptiona 66.6 5 0.00021 20.1 3.6 57 21-79 48-110 (147) 30 3cdh_A Transcriptional regulat 66.1 3.2 0.00014 21.2 2.6 72 6-79 40-117 (155) 31 3edy_A Tripeptidyl-peptidase 1 65.8 5.8 0.00024 19.8 3.8 50 9-60 45-98 (544) 32 3ech_A MEXR, multidrug resista 65.2 8 0.00034 19.0 4.5 61 20-80 48-112 (142) 33 3bj6_A Transcriptional regulat 64.4 2.8 0.00012 21.5 2.0 57 21-79 52-114 (152) 34 3bdd_A Regulatory protein MARR 64.0 2.2 9.1E-05 22.1 1.4 67 5-73 27-99 (142) 35 2pex_A Transcriptional regulat 63.7 2.2 9.1E-05 22.1 1.3 69 6-76 44-118 (153) 36 3boq_A Transcriptional regulat 62.8 8.3 0.00035 18.9 4.2 58 22-79 61-122 (160) 37 3oop_A LIN2960 protein; protei 62.8 2.1 8.8E-05 22.2 1.1 73 6-80 34-112 (143) 38 1s3j_A YUSO protein; structura 61.3 2.5 0.0001 21.8 1.3 72 6-79 34-111 (155) 39 3nqo_A MARR-family transcripti 60.9 9 0.00038 18.7 4.1 58 20-79 54-117 (189) 40 3fm5_A Transcriptional regulat 60.6 4.4 0.00018 20.4 2.4 59 19-79 50-114 (150) 41 1lj9_A Transcriptional regulat 60.2 3.3 0.00014 21.1 1.8 73 5-79 25-103 (144) 42 3jw4_A Transcriptional regulat 58.9 11 0.00045 18.3 4.3 62 18-79 52-117 (148) 43 2fbh_A Transcriptional regulat 58.6 9.5 0.0004 18.6 3.9 56 22-79 51-112 (146) 44 3cjn_A Transcriptional regulat 57.8 3.6 0.00015 20.9 1.6 59 20-80 63-127 (162) 45 2fbi_A Probable transcriptiona 57.5 2.5 0.0001 21.8 0.7 57 21-79 48-110 (142) 46 1xmk_A Double-stranded RNA-spe 57.5 4.2 0.00018 20.5 1.9 46 24-70 26-73 (79) 47 1z91_A Organic hydroperoxide r 56.8 2.1 9E-05 22.1 0.3 71 5-77 36-112 (147) 48 3deu_A Transcriptional regulat 56.6 4.8 0.0002 20.2 2.1 56 21-78 66-127 (166) 49 1y0u_A Arsenical resistance op 56.4 12 0.00049 18.1 4.2 41 24-70 44-87 (96) 50 2wte_A CSA3; antiviral protein 55.9 9 0.00038 18.7 3.4 52 20-75 163-217 (244) 51 3f3x_A Transcriptional regulat 55.4 3.6 0.00015 20.9 1.3 54 24-79 51-110 (144) 52 2rkh_A Putative APHA-like tran 53.7 7 0.0003 19.3 2.6 38 44-81 56-97 (180) 53 2w48_A Sorbitol operon regulat 51.4 11 0.00047 18.2 3.3 26 22-49 20-45 (315) 54 2nnn_A Probable transcriptiona 49.5 4.8 0.0002 20.2 1.2 58 20-79 49-112 (140) 55 2fbk_A Transcriptional regulat 49.1 9.4 0.00039 18.6 2.6 58 22-79 85-146 (181) 56 3e6m_A MARR family transcripti 48.1 4.5 0.00019 20.4 0.9 73 5-79 49-127 (161) 57 2g7u_A Transcriptional regulat 47.4 14 0.0006 17.6 3.3 60 7-74 17-77 (257) 58 1z4h_A TORI, TOR inhibition pr 47.3 17 0.0007 17.3 4.2 61 19-86 6-66 (66) 59 2rdp_A Putative transcriptiona 44.6 18 0.00077 17.0 3.9 56 22-79 55-116 (150) 60 1qbj_A Protein (double-strande 42.7 17 0.00071 17.2 3.1 46 21-69 25-73 (81) 61 2frh_A SARA, staphylococcal ac 42.2 17 0.00073 17.2 3.1 60 18-79 48-113 (127) 62 2esh_A Conserved hypothetical 41.2 13 0.00053 18.0 2.2 58 24-81 27-98 (118) 63 3df8_A Possible HXLR family tr 41.2 21 0.00088 16.7 4.4 51 25-77 44-97 (111) 64 2kfs_A Conserved hypothetical 40.4 22 0.00091 16.7 3.5 50 4-59 15-64 (148) 65 2hzt_A Putative HTH-type trans 38.1 23 0.00099 16.5 5.5 53 21-74 25-83 (107) 66 1b7y_B Phers, protein (phenyla 36.9 25 0.001 16.4 4.6 51 13-66 395-445 (785) 67 1mkm_A ICLR transcriptional re 34.3 27 0.0011 16.1 3.5 63 7-76 11-74 (249) 68 1xma_A Predicted transcription 33.7 18 0.00077 17.1 2.1 56 24-79 55-124 (145) 69 3f6v_A Possible transcriptiona 33.1 28 0.0012 16.0 3.5 57 21-79 69-128 (151) 70 3elk_A Putative transcriptiona 31.9 15 0.00064 17.5 1.5 51 29-79 37-95 (117) 71 3l6s_A Aspartyl aminopeptidase 31.7 19 0.00079 17.0 1.9 30 40-73 46-75 (485) 72 2ia2_A Putative transcriptiona 30.9 31 0.0013 15.8 2.9 61 8-76 25-86 (265) 73 2o3f_A Putative HTH-type trans 29.8 25 0.0011 16.3 2.3 34 17-52 33-66 (111) 74 3f8b_A Transcriptional regulat 29.6 25 0.001 16.3 2.2 56 24-79 26-95 (116) 75 1qgp_A Protein (double strande 28.3 29 0.0012 16.0 2.4 44 22-67 30-75 (77) 76 3iwf_A Transcription regulator 27.9 30 0.0013 15.9 2.4 33 18-52 30-62 (107) 77 1p4x_A Staphylococcal accessor 27.4 36 0.0015 15.5 4.2 62 18-79 45-110 (250) 78 3hhh_A Transcriptional regulat 27.1 26 0.0011 16.3 1.9 56 24-79 27-94 (116) 79 3l4g_A Phenylalanyl-tRNA synth 27.0 11 0.00046 18.3 0.0 56 19-74 16-72 (508) 80 2obp_A Putative DNA-binding pr 23.5 43 0.0018 15.0 3.7 58 21-78 34-93 (96) 81 2cxi_A Phenylalanyl-tRNA synth 22.8 44 0.0019 15.0 3.6 45 19-66 280-324 (348) 82 1u78_A TC3 transposase, transp 22.7 45 0.0019 15.0 4.0 30 23-52 77-106 (141) 83 1xsv_A Hypothetical UPF0122 pr 21.9 46 0.0019 14.9 3.2 34 21-56 39-72 (113) 84 1bia_A BIRA bifunctional prote 21.4 47 0.002 14.8 4.0 40 20-61 16-59 (321) 85 2e1n_A PEX, period extender; c 21.2 46 0.0019 14.9 2.3 56 24-79 48-117 (138) 86 2e58_A MNMC2; tRNA wobble urid 21.2 37 0.0015 15.4 1.8 26 36-61 225-251 (308) 87 2p4w_A Transcriptional regulat 21.2 48 0.002 14.8 4.2 49 22-72 27-83 (202) 88 1tty_A Sigma-A, RNA polymerase 20.5 50 0.0021 14.7 3.7 28 20-49 35-62 (87) 89 1t1e_A Kumamolisin; proenzyme, 20.3 50 0.0021 14.7 3.6 49 12-60 59-109 (552) No 1 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=92.29 E-value=0.16 Score=28.23 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=43.4 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCC Q ss_conf 765189999998777889899999---999879812202577532011611356445642010 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTG 80 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~ 80 (110) .+..+|.+|.+.+|-..|...|.. .|.+.||-. +.++-.|++|++|+.|-.--.|.. T Consensus 25 ~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve---~~g~G~Y~iT~~G~~yL~gelDa~ 84 (111) T 3b73_A 25 EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQ---PLANGVYVITEEGEAYLNGEYDAG 84 (111) T ss_dssp HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEE---ECSTTCEEECHHHHHHHTTCEETT T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE---ECCCCCEEECHHHHHHHHHHHCCC T ss_conf 499999999998688847999999999998787956---668700798966899998775226 No 2 >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Probab=90.51 E-value=0.22 Score=27.46 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=38.3 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 576518999999877788989999---9999879812202577532011611356445642 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) +.++-+.++|.+.|+ +|...|+ +.|...||-. ...++.+.||++|++.+..+. T Consensus 51 ~~~~vr~~dIA~~L~--vs~~sVs~~l~~L~~~GlI~---~~~~~~i~LT~~G~~~A~~i~ 106 (155) T 2h09_A 51 EVGEARQVDMAARLG--VSQPTVAKMLKRLATMGLIE---MIPWRGVFLTAEGEKLAQESR 106 (155) T ss_dssp HHSCCCHHHHHHHHT--SCHHHHHHHHHHHHHTTCEE---EETTTEEEECHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEE---ECCCCCEEECHHHHHHHHHHH T ss_conf 389770999999969--89789999999997788987---549987558985999999999 No 3 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Probab=88.88 E-value=0.39 Score=26.11 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=37.9 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 576518999999877788989999---9999879812202577532011611356445642 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) +.+.-+.++|.+.|+ .|.-.|+ +.|++.||- ....++.+.||++|++.+..+. T Consensus 21 ~~~~~~~~~lA~~L~--vs~~sv~~~l~~L~~~Glv---~~~~~~~i~LT~~G~~~A~~i~ 76 (230) T 1fx7_A 21 EGVTPLRARIAERLD--QSGPTVSQTVSRMERDGLL---RVAGDRHLELTEKGRALAIAVM 76 (230) T ss_dssp HTSCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSE---EECTTSCEEECHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCE---EECCCCCEEECHHHHHHHHHHH T ss_conf 499761999999878--8928999999999888898---9818988898889999999999 No 4 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Probab=87.36 E-value=0.6 Score=25.12 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=38.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 65765189999998777889899999---999879812202577532011611356445642 Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) .+.+..+.++|.+.|+ .|...|.+ .|...||-.. ..++.+.||++|++.+..+. T Consensus 16 ~~~~~v~~~~iA~~l~--vs~~sv~~~l~rL~~~g~i~~---~~~~~i~LT~~G~~~A~~i~ 72 (214) T 3hrs_A 16 TRHNKITNKEIAQLMQ--VSPPAVTEMMKKLLAEELLIK---DKKAGYLLTDLGLKLVSDLY 72 (214) T ss_dssp SSCSCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEE---ETTTEEEECHHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEE---CCCCCEEECHHHHHHHHHHH T ss_conf 0489778999999868--995799999999997899897---38977765787999999999 No 5 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Probab=86.89 E-value=0.56 Score=25.27 Aligned_cols=53 Identities=28% Similarity=0.289 Sum_probs=37.7 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 576518999999877788989999---9999879812202577532011611356445642 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) +.+..+.++|.+.|+ .|...|+ +.|.+.||- ....++.+.||++|++.+..+. T Consensus 19 ~~~~v~~~dlA~~L~--vs~~sv~~~lk~L~~~GlI---~~~~~~~i~LT~~G~~~A~~l~ 74 (142) T 1on2_A 19 EKGYARVSDIAEALA--VHPSSVTKMVQKLDKDEYL---IYEKYRGLVLTSKGKKIGKRLV 74 (142) T ss_dssp HHSSCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSE---EEETTTEEEECHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCC---CCCCCCCEEECHHHHHHHHHHH T ss_conf 379886999999969--8878999999999857984---4069986677788999999999 No 6 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=86.14 E-value=0.42 Score=25.98 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=41.8 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCCHH Q ss_conf 765189999998777889899999---999879812202577---53201161135644564201000 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTGKK 82 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~k~ 82 (110) .+..+.++|.+.++ +|.-.+.. .|.+.||-......+ +..+.+||+|++.+..+.+.... T Consensus 28 ~~~~t~~eLa~~l~--is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~l~~ 93 (100) T 1ub9_A 28 RRKAPFSQIQKVLD--LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKA 93 (100) T ss_dssp HSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH T ss_conf 89983999999989--1998999999999858906998748889731003599999999999999999 No 7 >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Probab=85.54 E-value=0.79 Score=24.48 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=37.5 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 5765189999998777889899999---999879812202577532011611356445642 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) +...-+.++|.+.|+ +|...|++ .|.+.||- ....++.+.||++|++.+..+. T Consensus 21 ~~~~v~~~~iA~~L~--vs~~svt~~l~~L~~~Gli---~~~~~~~v~LT~~G~~~A~~i~ 76 (226) T 2qq9_A 21 EGVTPLRARIAERLE--QSGPTVSQTVARMERDGLV---VVASDRSLQMTPTGRTLATAVM 76 (226) T ss_dssp HTCCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSE---EECTTSBEEECHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCE---EECCCCCEEECHHHHHHHHHHH T ss_conf 499651999999968--9917999999999988998---9728978798988999999999 No 8 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Probab=85.20 E-value=0.82 Score=24.39 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=41.0 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHH Q ss_conf 8765765189999998777889899999---9998798122025775320116113564456420 Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~d 78 (110) ...+.+.+|+++|+++++ +|.-.+++ .|.+.||-......-.....+|++|++.-..... T Consensus 21 ~~~~~~~ls~~eLa~~l~--is~~tvsr~l~~Le~~GlI~R~~d~R~~~v~LTekG~~~L~~~~~ 83 (230) T 3cta_A 21 EASNRAYLTSSKLADMLG--ISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA 83 (230) T ss_dssp TTSSEEECCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH T ss_pred HHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHHHHHHHH T ss_conf 415799858999999988--788899999999998898798115984478988879999999999 No 9 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=84.09 E-value=0.5 Score=25.54 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=48.4 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 1223366515888765765189999998777-889899999999879812202577---53201161135644564201 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) +|++..|-.-|-+=.+.+-.++.+|+++++- +.+..++=+.|...||-....... ++.+.+|++|++....++.. T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 110 (140) T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI 110 (140) T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 5999999999999986799899999999897864799999999727977982158888868888898899999999999 No 10 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Probab=83.60 E-value=0.63 Score=25.02 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=45.4 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC--CC-CEEECHHHHHHHHHHHH Q ss_conf 122336651588876576518999999877788989999---9999879812202577--53-20116113564456420 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG--RK-RDVLTPKGAKGGGRYFD 78 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g--rk-ew~lT~~G~k~g~~~~d 78 (110) +|++..|-.-|-.=.+. ..|+++|+++++ ++...|. +.|.+.||-.....+. |. ...+||+|++....+.. T Consensus 33 ~~lt~~q~~vL~~i~~~-~~t~~ela~~~~--i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 109 (146) T 2gxg_A 33 LNLSYLDFLVLRATSDG-PKTMAYLANRYF--VTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIE 109 (146) T ss_dssp TTCCHHHHHHHHHHTTS-CBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCC-CCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHH T ss_conf 69799999999999859-919999999989--798699999999986889786078767750443058989999999999 Q ss_pred CC Q ss_conf 10 Q gi|254780987|r 79 TG 80 (110) Q Consensus 79 t~ 80 (110) .. T Consensus 110 ~~ 111 (146) T 2gxg_A 110 IY 111 (146) T ss_dssp HH T ss_pred HH T ss_conf 99 No 11 >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Probab=81.97 E-value=1.4 Score=23.11 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=40.1 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH Q ss_conf 6651588876576518999999877788989999---999987981220257753201161135644564 Q gi|254780987|r 10 LQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110) Q Consensus 10 ~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110) +++|..- ..+.+.-+.++|.+.|+ +|...|. +.|.+.||-.. . ++...||++|++.+..+ T Consensus 19 L~aI~~l-~~~~~~v~~~~iA~~L~--vs~~svt~~l~~L~~~Glv~~---~-~~gi~LT~~G~~~A~~i 81 (139) T 2x4h_A 19 LLTIKRY-NDSGEGAKINRIAKDLK--IAPSSVFEEVSHLEEKGLVKK---K-EDGVWITNNGTRSINYL 81 (139) T ss_dssp HHHHHHH-HTTTSCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEE---E-TTEEEECHHHHHHHHHH T ss_pred HHHHHHH-HHCCCCCCHHHHHHHHC--CCCHHHHHHHHHHHHCCCEEE---E-CCCCEECHHHHHHHHHH T ss_conf 9999999-97599866999999968--890799999999998899545---0-47715788899999999 No 12 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=78.30 E-value=1.1 Score=23.75 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=47.8 Q ss_pred HCCCHHHHHCCCC--CCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHH Q ss_conf 1223366515888--76576518999999877788989999---999987981220257-75--3201161135644564 Q gi|254780987|r 5 LGVNVLQDINLPT--PNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRY 76 (110) Q Consensus 5 ~~~~~~~~~~LP~--~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~ 76 (110) .|++..|..-|.. .++.+-.++++|++.++ ++.-.+. +.|...||-...... .+ +...+|++|++....+ T Consensus 27 ~glt~~q~~vL~~l~~~~~~~~t~~ela~~l~--~~~~tvs~~v~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~ 104 (139) T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQ--RTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139) T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH T ss_conf 69899999999999835999969999999989--6887899999999978897851678998846757898899999999 Q ss_pred HHC Q ss_conf 201 Q gi|254780987|r 77 FDT 79 (110) Q Consensus 77 ~dt 79 (110) ... T Consensus 105 ~~~ 107 (139) T 3eco_A 105 TSI 107 (139) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 13 >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Probab=77.88 E-value=1.2 Score=23.56 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=46.5 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH Q ss_conf 122336651588876576518999999877788989999---9999879812202577---5320116113564456420 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110) +|++..|-.-|-.=.+.+-+++++|.+.++ ++.-.+. +.|.+.||-.....+. .+...+|++|++....... T Consensus 36 ~glt~~q~~vL~~L~~~~~~t~~~la~~l~--i~~~~vsr~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148) T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDILG--LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148) T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHH T ss_conf 498999999999999779979999999989--699899999999850793642479988883004339889999999999 Q ss_pred CCH Q ss_conf 100 Q gi|254780987|r 79 TGK 81 (110) Q Consensus 79 t~k 81 (110) ... T Consensus 114 ~~~ 116 (148) T 3nrv_A 114 FAI 116 (148) T ss_dssp HTH T ss_pred HHH T ss_conf 999 No 14 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=77.60 E-value=0.99 Score=23.94 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=43.8 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHHC Q ss_conf 22336651588876576518999999877788989999---9999879812202577-53--201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~dt 79 (110) |++..|-.-|-.=.+.+.+++++|++.++ ++.-.++ +.|.+.||-.....+. ++ .-.+||+|+++...+... T Consensus 28 gls~~~~~iL~~l~~~~~~t~~~la~~l~--~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 105 (145) T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWS--LPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTES 105 (145) T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 98999999999999879949999999989--6988999999999857987985768887746878898799999999999 No 15 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=77.56 E-value=0.95 Score=24.05 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=46.6 Q ss_pred CCCHHH--HHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHH Q ss_conf 223366--515888765765189999998777889899999---999879812202577---532011611356445642 Q gi|254780987|r 6 GVNVLQ--DINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 6 ~~~~~~--~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~ 77 (110) |++..| .+..-+.+..+.+|+++|++.++ ++.-.+.. .|.+.||-......+ .+...+|++|++....+. T Consensus 31 glt~~q~~vL~~l~~~~~~~~t~~~La~~l~--i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 108 (141) T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFS--IKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141) T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH T ss_conf 9899999999999848999959999999989--78858999999998877788663057984222111787899999999 Q ss_pred HC Q ss_conf 01 Q gi|254780987|r 78 DT 79 (110) Q Consensus 78 dt 79 (110) .. T Consensus 109 ~~ 110 (141) T 3bro_A 109 SY 110 (141) T ss_dssp HH T ss_pred HH T ss_conf 99 No 16 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=75.70 E-value=2.1 Score=22.13 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=44.5 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHH Q ss_conf 1223366515888765765189999998777-88989999999987981220257-75--32011611356445642 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYF 77 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~ 77 (110) +|++..|-.-|-.=.+.+-.++++|.+.++- +.+.-++=+.|...||-.....+ .+ +...+|++|++....+. T Consensus 42 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 118 (162) T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162) T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHH T ss_conf 59799999999999977998999999998968869999999999889979852799987568788988999999999 No 17 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=74.80 E-value=0.7 Score=24.75 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=51.3 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCC Q ss_conf 12233665158887657651899999987778-89899999999879812202577---532011611356445642010 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTG 80 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~ 80 (110) +|++..|-.-|-+=.+.+-.|+++|++.++-. .++-++-+.|.+.||-....... .....+|++|++-...+.... T Consensus 44 ~gLt~~q~~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~l~~~~~~~~ 123 (207) T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 123 (207) T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf 79999999999999976994999999998869879999999999689988723898875689888988999999999999 Q ss_pred HHCCC Q ss_conf 00158 Q gi|254780987|r 81 KKRSD 85 (110) Q Consensus 81 k~h~n 85 (110) .++.+ T Consensus 124 ~~~~~ 128 (207) T 2fxa_A 124 DPTRN 128 (207) T ss_dssp CGGGC T ss_pred HHHHH T ss_conf 99999 No 18 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=74.08 E-value=2.4 Score=21.84 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=44.3 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHHHC Q ss_conf 22336651588876576518999999877-788989999999987981220257--75-3201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~dt 79 (110) |++..|-.-|-.=.+.+-+++++|..+++ .+.+.-++=+.|...||-.....+ .| +...+||+|+.....+... T Consensus 34 glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~gli~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 111 (142) T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNA 111 (142) T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTTH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 979999999999997799899999999897987999999999988997983378888755644788799999999999 No 19 >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A Probab=73.22 E-value=2.5 Score=21.74 Aligned_cols=59 Identities=19% Similarity=0.049 Sum_probs=38.3 Q ss_pred CCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHC--CC-CCC--CEEECHHHHHHHHHHHHC Q ss_conf 57651899999987778-89899999999879812202--57-753--201161135644564201 Q gi|254780987|r 20 NLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEH--ES-GRK--RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~--~~-grk--ew~lT~~G~k~g~~~~dt 79 (110) +.+ .++++|+++++-. .+.-++=+.|...||-.-.. .+ .++ ...+||+|++....+... T Consensus 49 ~~~-~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~r~~d~~D~R~~~l~LT~~G~~~~~~~~~~ 113 (151) T 3kp7_A 49 IEA-LTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAI 113 (151) T ss_dssp HSC-BCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHH T ss_pred CCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH T ss_conf 289-99999999989688899999999988898301467765442244204678899999999999 No 20 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=73.06 E-value=2.7 Score=21.59 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=38.5 Q ss_pred CCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHH Q ss_conf 765189999998777-889899999999879812202577-5--320116113564456420 Q gi|254780987|r 21 LPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 21 ~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~d 78 (110) .+-.++++|++.++- +.+..++=+.|.+.||-....... + ..+.+|++|++....+.. T Consensus 57 ~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 118 (168) T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTE 118 (168) T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 79969999999989698899999999816442786533778854788778879999999999 No 21 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=72.56 E-value=3 Score=21.33 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=42.3 Q ss_pred CCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCC-CCC--CEEECHHHHHHHHHHHHC Q ss_conf 6518999999877-788989999999987981220257-753--201161135644564201 Q gi|254780987|r 22 PYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHES-GRK--RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 22 ~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~-grk--ew~lT~~G~k~g~~~~dt 79 (110) +-.++++|++.++ .+.+.-++=+.|.+.||-.....+ .++ .-.+|++|++....+... T Consensus 46 ~~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~~DrR~~~l~lT~~G~~~~~~~~~~ 107 (139) T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQ 107 (139) T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 99899999847086888999999999988987983058898867878898899999999999 No 22 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=71.88 E-value=3.6 Score=20.89 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=39.3 Q ss_pred CCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 518999999877788989999---9999879812202577---53201161135644564201 Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) -.|+++|++.++ +|.-.++ +.|.+.||-.....+. .....+|++|++....+... T Consensus 58 ~~t~~eLa~~l~--i~~~tvs~~i~~L~~~g~v~r~~~~~DrR~~~l~lT~~G~~~~~~~~~~ 118 (154) T 2eth_A 58 PKKMKEIAEFLS--TTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSN 118 (154) T ss_dssp CBCHHHHHHHTT--SCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf 949999999989--7988999999999988890210355556401200589899999999999 No 23 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=71.41 E-value=1.7 Score=22.73 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=42.2 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCCH Q ss_conf 765189999998777889899999---999879812202577---5320116113564456420100 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTGK 81 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~k 81 (110) .+-.++++|+..++ ++.-.++. .|.+.||-.....++ .+...+|++|++....+..... T Consensus 61 ~~~~t~~~La~~l~--i~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~ 125 (162) T 2fa5_A 61 YPGSSASEVSDRTA--MDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVN 125 (162) T ss_dssp STTCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHH T ss_conf 79989999999978--787159999999985798730457898885665789889999999999999 No 24 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=71.39 E-value=3.1 Score=21.23 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=41.0 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCCHHHCCC-CCC--CEEECHHHHHHHHHHHHCCH Q ss_conf 57651899999987778898999999---9987981220257-753--20116113564456420100 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKK---LREWGFLLEEHES-GRK--RDVLTPKGAKGGGRYFDTGK 81 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~l---L~~~GlQ~~~~~~-grk--ew~lT~~G~k~g~~~~dt~k 81 (110) +.+-.|+++|++.++ +|.-.+++. |.+.||-...... .++ ...+|++|++....+..... T Consensus 40 ~~~~~t~~eLa~~~~--~~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~l~lT~~G~~l~~~~~~~~~ 105 (138) T 3bpv_A 40 REPGIKQDELATFFH--VDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEE 105 (138) T ss_dssp HSTTCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHHH T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHH T ss_conf 589979999999989--798799999999996898786028998875687889899999999999999 No 25 >1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 Probab=71.10 E-value=2.7 Score=21.53 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=38.4 Q ss_pred CCHHHHHHHHCCC------CCHH---HHHHHHHHCCCCHHH-----CCCCCCCEEECHHHHHHHHHHHHCCHHC Q ss_conf 1899999987778------8989---999999987981220-----2577532011611356445642010001 Q gi|254780987|r 24 YTPTQLGKKLATK------PSAI---KVNKKLREWGFLLEE-----HESGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110) Q Consensus 24 ltPTqlGk~lg~k------~SA~---~vN~lL~~~GlQ~~~-----~~~grkew~lT~~G~k~g~~~~dt~k~h 83 (110) .++=+|-+.|.-- +|.- ..=+.|.+.||-... .+++|+.+.+||+|++.+..|..++..+ T Consensus 16 ~~GYel~k~l~~~~~~~~~~s~g~IY~~L~kLe~~GlI~~~~~~~~~~p~rk~Y~IT~~Gr~~l~~wl~~~~~~ 89 (179) T 1yg2_A 16 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 89 (179) T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCC T ss_conf 89999999999984883078978289999999977976898512689987637787889999999998566447 No 26 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=68.80 E-value=1.6 Score=22.88 Aligned_cols=72 Identities=22% Similarity=0.156 Sum_probs=43.7 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC Q ss_conf 22336651588876576518999999877788989999---9999879812202577-5--3201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110) |++..|-.-|-.=...+-.|+++|.+.++ ++.-.+. +.|.+.||-....... + +...+|++|++....+.+. T Consensus 30 gLt~~q~~vL~~i~~~~~~t~~ela~~~~--~~~~~vs~~v~~L~~~gli~~~~~~~DkR~~~i~lT~~G~~~~~~~~~~ 107 (145) T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLG--VAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIER 107 (145) T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 97999999999998779989999999989--7987899999998528937996758898867878898999999999999 No 27 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=67.97 E-value=2 Score=22.28 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=42.9 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCC---CCC--CEEECHHHHHHHHHH Q ss_conf 12233665158887657651899999987778898999---9999987981220257---753--201161135644564 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHES---GRK--RDVLTPKGAKGGGRY 76 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~---grk--ew~lT~~G~k~g~~~ 76 (110) +|++..|-.-|-.=.+.+-.++++|+++++ ++.-.+ =+.|...||-.....+ .++ ...+|++|++....+ T Consensus 37 ~glt~~q~~vL~~L~~~~~~t~~~La~~l~--~~~~tvs~~v~~L~~~glV~r~~~~~~~DrR~~~l~LT~~G~~~~~~~ 114 (154) T 2qww_A 37 LGLTIQQLAMINVIYSTPGISVADLTKRLI--ITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRS 114 (154) T ss_dssp HTCCHHHHHHHHHHHHSTTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHH T ss_conf 698999999999999779989999999979--787579999999997899799601566765610103488899999999 Q ss_pred H Q ss_conf 2 Q gi|254780987|r 77 F 77 (110) Q Consensus 77 ~ 77 (110) . T Consensus 115 ~ 115 (154) T 2qww_A 115 T 115 (154) T ss_dssp H T ss_pred H T ss_conf 9 No 28 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=66.74 E-value=6 Score=19.71 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=40.1 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCC---CCEEECHHHHHHHHHHHH Q ss_conf 5765189999998777889899999---9998798122025775---320116113564456420 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGR---KRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~gr---kew~lT~~G~k~g~~~~d 78 (110) +.+..|+++|++.++ ++.-.|++ .|...||-.....++. +...+|++|++....+.. T Consensus 45 ~~~~~t~~ela~~~~--~~~~~vs~~l~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 107 (138) T 1jgs_A 45 CAACITPVELKKVLS--VDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ 107 (138) T ss_dssp HHSSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 779989999999989--788799999999986897798556888875688889889999999999 No 29 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=66.56 E-value=5 Score=20.12 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=39.3 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 76518999999877788989999---9999879812202577---53201161135644564201 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) .+-.|+++|++.++ ++.-.+. +.|.+.||-.....+. +....+||+|++....+... T Consensus 48 ~g~~t~~ela~~~~--~~~~tvs~~l~~L~~~glv~r~~~~~DrR~~~i~lT~~G~~~~~~~~~~ 110 (147) T 2hr3_A 48 GGDVTPSELAAAER--MRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAK 110 (147) T ss_dssp TSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHHH T ss_conf 99989999999989--7987999999999867966873578877620024788899999999999 No 30 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=66.12 E-value=3.2 Score=21.16 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=42.9 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHHC Q ss_conf 22336651588876576518999999877788989999---9999879812202577--5-3201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~dt 79 (110) |+...|-.-|-.=.+.+-.++++|.+.++ ++--.+. +.|.+.||-......+ | +...+|++|+.....+... T Consensus 40 gLt~~q~~iL~~l~~~~~~t~~eLa~~l~--~~~~tvs~~v~~L~~~Glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 117 (155) T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSL--MEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVAS 117 (155) T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 96999999999998579969999999989--6998899999999968977983158888867878898999999999999 No 31 >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, prodomain, exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* Probab=65.75 E-value=5.8 Score=19.77 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=36.0 Q ss_pred HHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHH---HHHHHHHHCCCCHHHCCCCC Q ss_conf 366515888-76576518999999877788989---99999998798122025775 Q gi|254780987|r 9 VLQDINLPT-PNNLPYYTPTQLGKKLATKPSAI---KVNKKLREWGFLLEEHESGR 60 (110) Q Consensus 9 ~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~---~vN~lL~~~GlQ~~~~~~gr 60 (110) .++++.=|. |+--.||||.|+.++++| |.. +|-..|...||+.......+ T Consensus 45 ~~~~vsdP~S~~Y~~~Lt~~q~~~~f~p--s~~~~~~V~~wL~~~G~~v~~~~~~~ 98 (544) T 3edy_A 45 LVQAVSDPSSPQYGKYLTLENVADLVRP--SPLTLHTVQKWLLAAGAQKCHSVITQ 98 (544) T ss_dssp HHHHHHCTTSTTTTCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHTCEEEEECTTS T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 9998559999876888999999988792--99999999999998799536652478 No 32 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A Probab=65.17 E-value=8 Score=19.01 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=40.7 Q ss_pred CCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHHHCC Q ss_conf 57651899999987778-8989999999987981220257--75-32011611356445642010 Q gi|254780987|r 20 NLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYFDTG 80 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~dt~ 80 (110) +.+-.++++|.+.++-. .+..++=+.|.+.||-.....+ +| ....+||+|++....+.... T Consensus 48 ~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 112 (142) T 3ech_A 48 EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIM 112 (142) T ss_dssp HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHHHHHHHHHHHHH T ss_conf 77998999999998969879999999999879853503788887456578888999999999999 No 33 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=64.44 E-value=2.8 Score=21.51 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=38.5 Q ss_pred CCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 7651899999987778898999---99999879812202577---53201161135644564201 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) .+-.++++|+.+++ ++.-.+ =+.|.+.||-.....+. .+...+|++|++........ T Consensus 52 ~~~~t~~~La~~l~--~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 114 (152) T 3bj6_A 52 TPGATAPQLGAALQ--MKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRAD 114 (152) T ss_dssp STTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 79989999999989--6987999999999988997742499889845342589899999999999 No 34 >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89} Probab=63.97 E-value=2.2 Score=22.10 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=41.0 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC--CC-CCEEECHHHHHHH Q ss_conf 1223366515888765765189999998777889899999---99987981220257--75-3201161135644 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES--GR-KRDVLTPKGAKGG 73 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g 73 (110) +|+...|-.-|-.=.+.+-.++.+|++.++ ++.-.+++ .|.+.||-.....+ .| ....+|++|++.. T Consensus 27 ~glt~~q~~vL~~l~~~~~~t~~~la~~l~--i~~~tvs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 99 (142) T 3bdd_A 27 LGISLTRYSILQTLLKDAPLHQLALQERLQ--IDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142) T ss_dssp HSSCHHHHHHHHHHHHHCSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHH T ss_conf 496999999999998779989999999989--6986899999999858987844899998966878898899999 No 35 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=63.66 E-value=2.2 Score=22.10 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=42.0 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHH Q ss_conf 223366515888765765189999998777889899---999999879812202577---53201161135644564 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRY 76 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~ 76 (110) |+...|-.-|-.=.+.+-.++++|++.++ ++.-. +=+.|...||-.....+. .....+||+|++..... T Consensus 44 gLt~~q~~vL~~l~~~~~~~~~eLa~~l~--~~~~tvs~~v~~Le~~GlV~r~~~~~D~R~~~l~LT~~G~~~~~~~ 118 (153) T 2pex_A 44 DLTYPQYLVMLVLWETDERSVSEIGERLY--LDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153) T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH T ss_conf 97999999999998479989999999989--6886899999999988998981189988747878898999999999 No 36 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=62.84 E-value=8.3 Score=18.91 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=41.1 Q ss_pred CCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 6518999999877-7889899999999879812202577---53201161135644564201 Q gi|254780987|r 22 PYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 22 ~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) +-.++++|+++++ .+.+.-.+=..|...||-.....+. .....+|++|+.....+... T Consensus 61 ~~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~~DrR~~~v~lT~~G~~~~~~~~~~ 122 (160) T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEA 122 (160) T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 99989999999896885899999999867987987768888757887788899999999999 No 37 >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Probab=62.81 E-value=2.1 Score=22.18 Aligned_cols=73 Identities=18% Similarity=0.013 Sum_probs=45.7 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 223366515888765765189999998777889899999---999879812202577---53201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) |++..|-.-|-.=.+.+-.++.+|.+.++ ++.-.++. .|...||-.....+. .+...+||+|++....+... T Consensus 34 glt~~q~~iL~~l~~~~~~t~~~La~~l~--i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 111 (143) T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTK--KDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDI 111 (143) T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 99999999999998689979999999989--6997999999999756774341058998944768898999999999999 Q ss_pred C Q ss_conf 0 Q gi|254780987|r 80 G 80 (110) Q Consensus 80 ~ 80 (110) . T Consensus 112 ~ 112 (143) T 3oop_A 112 V 112 (143) T ss_dssp H T ss_pred H T ss_conf 9 No 38 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=61.33 E-value=2.5 Score=21.77 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=44.2 Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHHC Q ss_conf 22336651588876576518999999877788989999---9999879812202577-53--201161135644564201 Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~dt 79 (110) |++..|-.-|-.=.+.+-.++++|.+.++ ++.-.+. +.|.+.||-.....+. ++ .-.+|++|++....+... T Consensus 34 glt~~q~~vL~~l~~~~~~t~~ela~~~~--~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~ 111 (155) T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERME--VKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAG 111 (155) T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf 98999999999999869979999999989--6998999999999862425520233677520002489899999999999 No 39 >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Probab=60.88 E-value=9 Score=18.74 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=39.1 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHHHC Q ss_conf 576518999999877788989999---999987981220257-75--3201161135644564201 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~dt 79 (110) .++-.|+++|.+.++ ++.-.|. +.|...||-.....+ .+ ..-.+||+|++....+... T Consensus 54 ~~~~~t~~eLa~~l~--i~~stvs~~v~~Le~~glI~r~~~~~D~R~~~l~LT~kG~~~~~~~~~~ 117 (189) T 3nqo_A 54 PEEETTLNNIARKMG--TSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRT 117 (189) T ss_dssp CGGGCCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 899909999999989--6886999999999987986374326765401346788899999999999 No 40 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Probab=60.58 E-value=4.4 Score=20.44 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=40.3 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 6576518999999877788989999---9999879812202577---53201161135644564201 Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) ++.+-.|+.+|.+.++ ++.-.++ +.|.+.||-.....+. +....+|++|++....+... T Consensus 50 ~~~~~~t~~ela~~l~--~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~l~~~~~~~ 114 (150) T 3fm5_A 50 EQAEGVNQRGVAATMG--LDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKAR 114 (150) T ss_dssp HSTTCCCSHHHHHHHT--CCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf 8598989999999978--8787788999989764764660186656612430589899999999999 No 41 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=60.22 E-value=3.3 Score=21.11 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=42.6 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHH Q ss_conf 1223366515888765765189999998777889899999---999879812202577--5-320116113564456420 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~d 78 (110) +|++..|-.-|-.=.+.+-.++++|++.++ ++.-.++. .|.+.||-.....+. | ..-.+||+|++.-..+.. T Consensus 25 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~--i~~~~vs~~v~~L~~~g~i~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 102 (144) T 1lj9_A 25 LSLTRGQYLYLVRVCENPGIIQEKIAELIK--VDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVR 102 (144) T ss_dssp GTCTTTHHHHHHHHHHSTTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHH T ss_conf 798999999999998489979999999989--788899999999996898631148888880022588899999999999 Q ss_pred C Q ss_conf 1 Q gi|254780987|r 79 T 79 (110) Q Consensus 79 t 79 (110) . T Consensus 103 ~ 103 (144) T 1lj9_A 103 E 103 (144) T ss_dssp H T ss_pred H T ss_conf 9 No 42 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=58.88 E-value=11 Score=18.34 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=42.1 Q ss_pred CCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 76576518999999877-7889899999999879812202577---53201161135644564201 Q gi|254780987|r 18 PNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 18 ~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) .+.++-.|+.+|.++++ .+.+.-++=+.|.+.||-.....+. .....+||+|++....+... T Consensus 52 ~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 117 (148) T 3jw4_A 52 ENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNI 117 (148) T ss_dssp HHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHH T ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 379999399999999897785899999999988885105778888834768898899999999999 No 43 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=58.57 E-value=9.5 Score=18.60 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=38.2 Q ss_pred CCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 65189999998777889899---999999879812202577---53201161135644564201 Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) +-.++++|+++++ ++.-. +-+.|.+.||-.....+. .+...+||+|++....+... T Consensus 51 ~~~t~~eL~~~~~--~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 112 (146) T 2fbh_A 51 DSPTQRELAQSVG--VEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAI 112 (146) T ss_dssp SCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHHH T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 9999999999989--6898999999999639877863678998956878898899999999999 No 44 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=57.82 E-value=3.6 Score=20.89 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=38.5 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCC Q ss_conf 5765189999998777889899999---999879812202577---532011611356445642010 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTG 80 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~ 80 (110) ..+-.|+++|+++++ ++.-.|++ .|.+.||-.....+. .+.-.+||+|++....+.... T Consensus 63 ~~~~~t~~~La~~~~--~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 127 (162) T 3cjn_A 63 AKDGLPIGTLGIFAV--VEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162) T ss_dssp HSCSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH T ss_conf 479989999999989--79889999999998689668852268888667678988999999999999 No 45 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=57.51 E-value=2.5 Score=21.78 Aligned_cols=57 Identities=18% Similarity=-0.007 Sum_probs=39.0 Q ss_pred CCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHHC Q ss_conf 765189999998777889899---999999879812202577--5-3201161135644564201 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~dt 79 (110) .+-.++++|.++++ ++.-. +=+.|...||-.....+. | +...+||+|++....+... T Consensus 48 ~~~~~~~~la~~l~--i~~~~vs~~i~~L~~~glI~~~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 110 (142) T 2fbi_A 48 QGEMESYQLANQAC--ILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGD 110 (142) T ss_dssp HCSEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 79979999999979--8988999999999958987983068898867878898899999999999 No 46 >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Probab=57.46 E-value=4.2 Score=20.54 Aligned_cols=46 Identities=17% Similarity=0.024 Sum_probs=31.9 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCC--CCCCEEECHHHH Q ss_conf 18999999877788989999999987981220257--753201161135 Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHES--GRKRDVLTPKGA 70 (110) Q Consensus 24 ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~--grkew~lT~~G~ 70 (110) -++-+|.+.||-+ .|+.||..|-+.-=|-..++. .-+.|.+|++.. T Consensus 26 stAl~iAk~LGl~-kakeVN~~LY~L~k~g~v~k~~~tPP~W~l~~~~~ 73 (79) T 1xmk_A 26 SSALNLAKNIGLT-KARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKR 73 (79) T ss_dssp EEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHH T ss_pred CHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCEECCCCCCCCEEEHHHHH T ss_conf 5399999992997-26777499999997678122799899634107378 No 47 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=56.79 E-value=2.1 Score=22.13 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=44.0 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHH Q ss_conf 1223366515888765765189999998777889899---999999879812202577-53--2011611356445642 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYF 77 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~ 77 (110) +|++-.|-.-|-.=.+.+-.|+++|++.++ ++.-. +=+.|...||-.....+. ++ ...+|++|++....+. T Consensus 36 ~glt~~q~~vL~~l~~~~~~t~~eLa~~~~--i~~~tit~~i~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 112 (147) T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLY--LDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV 112 (147) T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTT--CCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHH T ss_conf 698999999999999779949999999979--78878999999999889979867788775468788988999999999 No 48 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=56.61 E-value=4.8 Score=20.20 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=36.8 Q ss_pred CCCCCHHHHHHHHCCCCCHH---HHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH Q ss_conf 76518999999877788989---9999999879812202577---5320116113564456420 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAI---KVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~---~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110) .+-.++++|.+.++ ++.- ++=+.|...||-.....+. .+...+||+|++....+-. T Consensus 66 ~~~~t~~eLa~~l~--i~~stvsr~v~~L~~~GlI~r~~~~~DrR~~~v~LT~~G~~~~~~~~~ 127 (166) T 3deu_A 66 PPDQSQIQLAKAIG--IEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 127 (166) T ss_dssp CSSEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 98979999999979--899899999999985898886131689885787778769999999999 No 49 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=56.35 E-value=12 Score=18.10 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=30.1 Q ss_pred CCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHH Q ss_conf 18999999877788989999---999987981220257753201161135 Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGA 70 (110) Q Consensus 24 ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~ 70 (110) .+.++|.+.++ +|--.+. +.|.++||-... ++.|++|++|+ T Consensus 44 ~~~~eLa~~lg--~s~stvs~HL~~L~~aGLV~~~----~~~y~lt~~G~ 87 (96) T 1y0u_A 44 RSEEEIMQTLS--LSKKQLDYHLKVLEAGFCIERV----GERWVVTDAGK 87 (96) T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEE----TTEEEECTTTC T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEE----CCEEEECCCCH T ss_conf 97999999989--1998999999999988967984----79899865774 No 50 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Probab=55.94 E-value=9 Score=18.73 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=35.7 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHH Q ss_conf 5765189999998777889899999---9998798122025775320116113564456 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGR 75 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~ 75 (110) +.+..+.++|.+++| +|...+.+ .|.+.||-.. .+.++...+|++|...... T Consensus 163 ~~~~~s~~ela~~l~--~s~~tv~r~l~~Le~~GlV~r--~~r~~~v~LT~~G~~~~~~ 217 (244) T 2wte_A 163 ETKGTGITELAKMLD--KSEKTLINKIAELKKFGILTQ--KGKDRKVELNELGLNVIKL 217 (244) T ss_dssp HHTCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEE--ETTTTEEEECHHHHHHHHH T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEE--ECCCCEEEECHHHHHHHHH T ss_conf 779989999999979--798899999999998899998--3782279987879999999 No 51 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Probab=55.44 E-value=3.6 Score=20.91 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=37.5 Q ss_pred CCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHHC Q ss_conf 18999999877788989999---9999879812202577-53--201161135644564201 Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 24 ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~dt 79 (110) .++++|+++++ +|.-++. +.|.+.||-.....+. ++ .-.+|++|.+....+... T Consensus 51 ~t~~~la~~~~--~~~~tvs~~i~~L~~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 110 (144) T 3f3x_A 51 RSMVYLANRYF--VTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEV 110 (144) T ss_dssp EEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 69999999989--7886899999999988984444778888845767898999999999999 No 52 >2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum ms-1} Probab=53.73 E-value=7 Score=19.32 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=28.4 Q ss_pred HHHHHCCCCHHH----CCCCCCCEEECHHHHHHHHHHHHCCH Q ss_conf 999987981220----25775320116113564456420100 Q gi|254780987|r 44 KKLREWGFLLEE----HESGRKRDVLTPKGAKGGGRYFDTGK 81 (110) Q Consensus 44 ~lL~~~GlQ~~~----~~~grkew~lT~~G~k~g~~~~dt~k 81 (110) +.|.+.||-... ..+.|+.+.+|++|++.+..|...+. T Consensus 56 ~kLe~~GlI~~~e~~~~~p~rkvY~IT~~Gr~~l~~wl~~~~ 97 (180) T 2rkh_A 56 ELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSLLTARL 97 (180) T ss_dssp HHHHHTTSEECCC--------CEEEECHHHHHHHHHHHSCCC T ss_pred HHHHHCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCC T ss_conf 999986980143103689876588856689999999987425 No 53 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=51.42 E-value=11 Score=18.22 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=22.8 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 6518999999877788989999999987 Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110) +-+|-.||+++|| +|-..|+++|+++ T Consensus 20 ~g~tQ~eIA~~lg--iSR~~VsRlL~~A 45 (315) T 2w48_A 20 QDMTQAQIARELG--IYRTTISRLLKRG 45 (315) T ss_dssp SCCCHHHHHHHTT--CCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHH T ss_conf 4999999999879--5999999999999 No 54 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=49.54 E-value=4.8 Score=20.21 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=38.8 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC Q ss_conf 576518999999877788989999---9999879812202577-5--3201161135644564201 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110) +.+-.++++|.+.++ ++.-.|. +.|.+.||-.....+. + +...+|++|++........ T Consensus 49 ~~~~~t~~eLa~~~~--~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 112 (140) T 2nnn_A 49 ETGPCPQNQLGRLTA--MDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAA 112 (140) T ss_dssp HHSSBCHHHHHHHTT--CCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHC--CCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 879909999999878--5735299999999738966972279998867888898899999999999 No 55 >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Probab=49.12 E-value=9.4 Score=18.64 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=37.7 Q ss_pred CCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHCCC-C--CCCEEECHHHHHHHHHHHHC Q ss_conf 6518999999877788-989999999987981220257-7--53201161135644564201 Q gi|254780987|r 22 PYYTPTQLGKKLATKP-SAIKVNKKLREWGFLLEEHES-G--RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~-SA~~vN~lL~~~GlQ~~~~~~-g--rkew~lT~~G~k~g~~~~dt 79 (110) +-+|+++|++.++-.. +.-++=+.|...||-...... . .+...+|++|++....+... T Consensus 85 ~~lt~~eLa~~l~~s~~~vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~l~~~~~~~ 146 (181) T 2fbk_A 85 EGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPA 146 (181) T ss_dssp SCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHHH T ss_conf 99099999999787875799999999987882435787788622113288899999999999 No 56 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=48.10 E-value=4.5 Score=20.35 Aligned_cols=73 Identities=16% Similarity=0.040 Sum_probs=45.5 Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH Q ss_conf 1223366515888765765189999998777889899999---999879812202577---5320116113564456420 Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110) .|++..|-.-|-.=.+.+-.++++|.+.++ ++.-.+.+ .|.+.||-....... .....+|++|++.-..+.. T Consensus 49 ~gLt~~q~~vL~~l~~~~~~t~~~la~~l~--i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 126 (161) T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGV--MEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (161) T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHH T ss_conf 697999999999999779989999999989--788799999999983897798325899873110168889999999999 Q ss_pred C Q ss_conf 1 Q gi|254780987|r 79 T 79 (110) Q Consensus 79 t 79 (110) . T Consensus 127 ~ 127 (161) T 3e6m_A 127 L 127 (161) T ss_dssp H T ss_pred H T ss_conf 9 No 57 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=47.37 E-value=14 Score=17.65 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=37.9 Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHH Q ss_conf 2336651588876576518999999877-7889899999999879812202577532011611356445 Q gi|254780987|r 7 VNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGG 74 (110) Q Consensus 7 ~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~ 74 (110) ..+++.+. ...+-++.++|.+++| +|.++-+.=+-|.+.||.. +.+ +.|.++++=-..|. T Consensus 17 l~IL~~~~----~~~~~~~~~eia~~~gl~~st~~RlL~tL~~~G~l~---~~~-~~Y~lG~~~~~l~~ 77 (257) T 2g7u_A 17 FAVLLAFD----AQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSG-GRWSLTPRVLSIGQ 77 (257) T ss_dssp HHHHHTCS----SSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE---EET-TEEEECGGGHHHHT T ss_pred HHHHHHHH----HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE---ECC-CEEEECCHHHHHHH T ss_conf 99999998----479998999999987939999999999999738653---229-83785504764435 No 58 >1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} Probab=47.27 E-value=17 Score=17.28 Aligned_cols=61 Identities=7% Similarity=0.027 Sum_probs=45.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCCHHCCCC Q ss_conf 65765189999998777889899999999879812202577532011611356445642010001588 Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTGKKRSDG 86 (110) Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~k~h~nG 86 (110) +.+.+++..|+-+++| +|-..+-++..+.-|--....++|..|...+. +.|-....++ +|| T Consensus 6 ~~~~llr~keV~~~~g--lsrstiy~~i~~G~FP~piklg~r~~W~~sei-~~Wi~~~~~~----~~g 66 (66) T 1z4h_A 6 QPDSLVDLKFIMADTG--FGKTFIYDRIKSGDLPKAKVIHGRARWLYRDH-CEFKNKLLSR----ANG 66 (66) T ss_dssp CSSSEECHHHHHHHHS--SCHHHHHHHHHHHHCCCSEESSSCEEEEHHHH-HHHHHHHHHH----TCC T ss_pred CCCCCCCHHHHHHHHC--CCHHHHHHHHHCCCCCCCEECCCCCEECHHHH-HHHHHHHHHH----CCC T ss_conf 8542064999999989--79999999998799999873498531469999-9999999986----279 No 59 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=44.57 E-value=18 Score=17.04 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=38.3 Q ss_pred CCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCC---CEEECHHHHHHHHHHHHC Q ss_conf 6518999999877788989999---999987981220257753---201161135644564201 Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRK---RDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grk---ew~lT~~G~k~g~~~~dt 79 (110) +-.++++|++.++ ++.-.+. +.|.+.||-.....+.-+ ...+|++|...-..+... T Consensus 55 ~~~t~~~La~~l~--~~~~~vs~~l~~L~~~Gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 116 (150) T 2rdp_A 55 GDLTVGELSNKMY--LACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEK 116 (150) T ss_dssp CSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 9959999999989--6887899999999718977985216898857867898999999999999 No 60 >1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A Probab=42.71 E-value=17 Score=17.25 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=32.0 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHH---CCCCHHHCCCCCCCEEECHHH Q ss_conf 7651899999987778898999999998---798122025775320116113 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLRE---WGFLLEEHESGRKRDVLTPKG 69 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~---~GlQ~~~~~~grkew~lT~~G 69 (110) ....+.-+|.+.|+ ++-+.||+.|-. .|.-.. ....-..|.+|+.. T Consensus 25 g~~~tA~~LAk~lg--~~Kk~vN~~LY~L~k~g~v~~-~~~~PP~W~l~~~~ 73 (81) T 1qbj_A 25 GKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVST 73 (81) T ss_dssp TCCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC--- T ss_pred CCCHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECCCC T ss_conf 97521999999969--888898999999998798640-69989960637888 No 61 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=42.18 E-value=17 Score=17.18 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=39.7 Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHHC Q ss_conf 76576518999999877788989999---9999879812202577--5-3201161135644564201 Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~dt 79 (110) .++..-+++++|++.++ ++.-.+. +.|.+.||-.....+. | ..-.+||+|.+..+.+... T Consensus 48 ~~~~~~~t~~ela~~l~--~~~~~vs~~l~~Le~~glI~r~~~~~D~R~~~i~lT~~G~~~~~~l~~~ 113 (127) T 2frh_A 48 ENKEKEYYLKDIINHLN--YKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 113 (127) T ss_dssp HTCCSEEEHHHHHHHSS--SHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHH T ss_pred HCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 28999878999999979--8873699999999978977984037899858989998999999999999 No 62 >2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61 Probab=41.24 E-value=13 Score=17.95 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=37.2 Q ss_pred CCHHHHHHHHCC-------CC---CHHHHHHHHHHCCCCHHHCC----CCCCCEEECHHHHHHHHHHHHCCH Q ss_conf 189999998777-------88---98999999998798122025----775320116113564456420100 Q gi|254780987|r 24 YTPTQLGKKLAT-------KP---SAIKVNKKLREWGFLLEEHE----SGRKRDVLTPKGAKGGGRYFDTGK 81 (110) Q Consensus 24 ltPTqlGk~lg~-------k~---SA~~vN~lL~~~GlQ~~~~~----~grkew~lT~~G~k~g~~~~dt~k 81 (110) ..+-+|-+.+.- ++ +--.+=+.|.+.||-..... ..|+.+.+||+|++....+..... T Consensus 27 ~~GYei~k~i~~~~~~~~~~~~~gtiY~~L~rLe~~GlI~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~~~ 98 (118) T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSLE 98 (118) T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHH T ss_conf 989999999998447873058976079999999988976999731689886798989889999999999999 No 63 >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} Probab=41.20 E-value=21 Score=16.74 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=36.1 Q ss_pred CHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCCCCCCCEEECHHHHHHHHHHH Q ss_conf 8999999877788989999999---9879812202577532011611356445642 Q gi|254780987|r 25 TPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110) Q Consensus 25 tPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110) +-.||-+.+.+ +|.+..++.| .+.|+-... .+.+-+|.+|++|+.....+. T Consensus 44 ~F~el~~~l~~-Is~~~Ls~rLk~L~~~Glv~r~-~~~~veY~LT~~G~~L~~il~ 97 (111) T 3df8_A 44 NFNDIRSSIPG-ISSTILSRRIKDLIDSGLVERR-SGQITTYALTEKGMNVRNSLM 97 (111) T ss_dssp CHHHHHHTSTT-CCHHHHHHHHHHHHHTTSEEEE-ESSSEEEEECHHHHHHHHHHH T ss_pred CHHHHHHHCCC-CCHHHHHHHHHHHHHCCEEEEC-CCCCEEEEECCCHHHHHHHHH T ss_conf 79999987202-3588899999999979937726-999758877968889999999 No 64 >2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} Probab=40.35 E-value=22 Score=16.67 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.0 Q ss_pred HHCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCC Q ss_conf 01223366515888765765189999998777889899999999879812202577 Q gi|254780987|r 4 VLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESG 59 (110) Q Consensus 4 ~~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~g 59 (110) |-++-..+++- ...+++||..++.++|| +|-.+|++++.+.-+- .+.+++ T Consensus 15 v~~i~~~~d~L---~~~~~~lt~~evA~~LG--vs~~~V~~~i~~~~Ll-av~~g~ 64 (148) T 2kfs_A 15 VGSIPAGDDVL---DPDEPTYDLPRVAELLG--VPVSKVAQQLREGHLV-AVRRAG 64 (148) T ss_dssp CSCCCCCBCCS---CTTSCEEEHHHHHHHHT--CCHHHHHHHHHTTSCC-CEEETT T ss_pred HHCCCCCCHHC---CCCCCCCCHHHHHHHHC--CCHHHHHHHHHCCCEE-EEECCC T ss_conf 61777751000---46776348999999969--9889999999869259-997099 No 65 >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Probab=38.11 E-value=23 Score=16.47 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=36.5 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCC---CCCCCEEECHHHHHHHH Q ss_conf 76518999999877788989999999---98798122025---77532011611356445 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHE---SGRKRDVLTPKGAKGGG 74 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~---~grkew~lT~~G~k~g~ 74 (110) .+-.+..||-+.+.+ +|.+..++.| .+.||-..... +-+-+|.+|++|+.... T Consensus 25 ~g~~RF~eL~~~l~g-IS~~~Ls~rLk~Le~~GLv~R~~~~~~p~~veY~LT~~G~~L~~ 83 (107) T 2hzt_A 25 HGKKRTSELKRLMPN-ITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107) T ss_dssp TCCBCHHHHHHHCTT-SCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH T ss_pred CCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECHHHHHHHH T ss_conf 199869999977646-79889999999999878455312568999557777851889999 No 66 >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 2iy5_B* Probab=36.92 E-value=25 Score=16.36 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=38.9 Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEC Q ss_conf 158887657651899999987778898999999998798122025775320116 Q gi|254780987|r 13 INLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66 (110) Q Consensus 13 ~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT 66 (110) ...+..+..-.+++..+-+.+|..++...+-++|...||+.+. ..+.|..| T Consensus 395 ~~~~~~~~~I~l~~~~i~~~lG~~i~~~ei~~iL~~Lgf~v~~---~~~~~~V~ 445 (785) T 1b7y_B 395 AGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG---EGPTYRVT 445 (785) T ss_dssp ECCCCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEES---SSSSEEEE T ss_pred ECCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEC---CCCEEEEE T ss_conf 1034564000000788764125200104689999847996985---89528998 No 67 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=34.31 E-value=27 Score=16.12 Aligned_cols=63 Identities=24% Similarity=0.170 Sum_probs=40.0 Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH Q ss_conf 2336651588876576518999999877-788989999999987981220257753201161135644564 Q gi|254780987|r 7 VNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110) Q Consensus 7 ~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110) ..+++.+. ....-++.+||.+.+| +|.++-++=+-|.+.||- .+...+.|.++++=-..+... T Consensus 11 l~IL~~~a----~~~~~~tl~eia~~lglpksT~~Rll~tL~~~G~l---~~~~~~~Y~lG~~~~~l~~~~ 74 (249) T 1mkm_A 11 FEILDFIV----KNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFV---LRKKDKRYVPGYKLIEYGSFV 74 (249) T ss_dssp HHHHHHHH----HCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSE---EECTTSCEEECTHHHHHHHHH T ss_pred HHHHHHHH----HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE---EECCCCCHHHHHHHHHHHHHH T ss_conf 99999997----38999899999998791999999999999977986---532553201324654446766 No 68 >1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 Probab=33.68 E-value=18 Score=17.06 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=34.2 Q ss_pred CCHHHHHHHHC------CCCCHHHH---HHHHHHCCCCHHH-----CCCCCCCEEECHHHHHHHHHHHHC Q ss_conf 18999999877------78898999---9999987981220-----257753201161135644564201 Q gi|254780987|r 24 YTPTQLGKKLA------TKPSAIKV---NKKLREWGFLLEE-----HESGRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 24 ltPTqlGk~lg------~k~SA~~v---N~lL~~~GlQ~~~-----~~~grkew~lT~~G~k~g~~~~dt 79 (110) ...-+|-+.+. -.+|.-.+ =+.|.+.||-... ....|+.+.+||+|+++...+... T Consensus 55 ~~GYeI~k~i~~~~~~~~~is~gslYp~L~rLe~~GlI~s~~~~~~~gr~Rk~Y~IT~~G~~~L~~~~~e 124 (145) T 1xma_A 55 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145) T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 8899999999998499543787761999999997896699973057897657999898899999999999 No 69 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Probab=33.10 E-value=28 Score=16.01 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.9 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC Q ss_conf 76518999999877788989999---999987981220257753201161135644564201 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110) .+.++.++|.+.|+ +|.-+|- +.|.++||-.....+.+.-|.+++.+-+.-..+++. T Consensus 69 ~g~~tv~eLa~~l~--is~stvS~HL~~L~~aGLV~~~r~Gr~~~Y~L~~~~l~~l~~~l~~ 128 (151) T 3f6v_A 69 SGEQTVNNLAAHFP--ASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDS 128 (151) T ss_dssp GCCEEHHHHHTTSS--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHH T ss_conf 09938999999989--1999999999989988975889877989999887999999999999 No 70 >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum} Probab=31.95 E-value=15 Score=17.49 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=30.3 Q ss_pred HHHHHCCCCCHHH---HHHHHHHCCCCHHH-CCC----CCCCEEECHHHHHHHHHHHHC Q ss_conf 9998777889899---99999987981220-257----753201161135644564201 Q gi|254780987|r 29 LGKKLATKPSAIK---VNKKLREWGFLLEE-HES----GRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 29 lGk~lg~k~SA~~---vN~lL~~~GlQ~~~-~~~----grkew~lT~~G~k~g~~~~dt 79 (110) |.++.+..+|.-. +=+.|.+.||-... ..+ .|+.+.+|++|+++...+... T Consensus 37 i~~~~~~~~~~g~lY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~ 95 (117) T 3elk_A 37 MFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQA 95 (117) T ss_dssp HHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTT T ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 99984899997648999999998898799976347898866989898899999999999 No 71 >3l6s_A Aspartyl aminopeptidase; hydrolase, structural genomics consortium, SGC, metal-binding, metalloprotease, protease, zinc; HET: SD3; 2.20A {Homo sapiens} Probab=31.74 E-value=19 Score=16.98 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=21.5 Q ss_pred HHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHH Q ss_conf 9999999987981220257753201161135644 Q gi|254780987|r 40 IKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGG 73 (110) Q Consensus 40 ~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g 73 (110) ..+-++|.++||+ ...+++.|.+.+.| ||+ T Consensus 46 ~~~~~~L~~~Gf~---~l~e~~~w~l~~g~-kyy 75 (485) T 3l6s_A 46 AECRNRLLQAGFS---ELKETEKWNIKPES-KYF 75 (485) T ss_dssp HHHHHHHHHTTCE---ECCTTSCCCCCTTC-EEE T ss_pred HHHHHHHHHCCCE---ECCCCCCCCCCCCC-EEE T ss_conf 9999999987698---85666766656899-899 No 72 >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} Probab=30.93 E-value=31 Score=15.83 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=37.8 Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH Q ss_conf 336651588876576518999999877-788989999999987981220257753201161135644564 Q gi|254780987|r 8 NVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110) Q Consensus 8 ~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110) .+++.+ +. ...-++.++|.+.++ +|.++-++=+-|.+.||-. +.+ +.|.++++=-..+... T Consensus 25 ~ILe~l---a~-~~~~lsl~eia~~l~l~kst~~RlL~tL~~~G~l~---~~~-~~Y~lG~~~~~l~~~~ 86 (265) T 2ia2_A 25 AVIRCF---DH-RNQRRTLSDVARATDLTRATARRFLLTLVELGYVA---TDG-SAFWLTPRVLELGYSY 86 (265) T ss_dssp HHHHTC---CS-SCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE---ESS-SEEEECGGGGGTTHHH T ss_pred HHHHHH---HH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE---ECC-CCCCCCHHHHHHHHHH T ss_conf 999999---73-79997999999997949999999999999879953---069-7320347888888877 No 73 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=29.77 E-value=25 Score=16.28 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=30.3 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC Q ss_conf 876576518999999877788989999999987981 Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110) Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110) -|++-.+.+.++|.++.+ .|...|.+.....||. T Consensus 33 n~~~v~~~si~elA~~~~--vS~aTI~Rf~kklGf~ 66 (111) T 2o3f_A 33 HPHXAIESTVNEISALAN--SSDAAVIRLCXSLGLK 66 (111) T ss_dssp CHHHHHTCCHHHHHHHTT--CCHHHHHHHHHHTTCS T ss_pred CHHHHHHCCHHHHHHHHC--CCHHHHHHHHHHHCCC T ss_conf 924764378999998979--8987999999992779 No 74 >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A* Probab=29.55 E-value=25 Score=16.33 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=34.4 Q ss_pred CCHHHHHHHHC----C--CCCHHHH---HHHHHHCCCCHHH-CC----CCCCCEEECHHHHHHHHHHHHC Q ss_conf 18999999877----7--8898999---9999987981220-25----7753201161135644564201 Q gi|254780987|r 24 YTPTQLGKKLA----T--KPSAIKV---NKKLREWGFLLEE-HE----SGRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 24 ltPTqlGk~lg----~--k~SA~~v---N~lL~~~GlQ~~~-~~----~grkew~lT~~G~k~g~~~~dt 79 (110) ..+-+|-+.+. . ++|.-.+ =+.|.+.||-... .. +.|+.+.+||+|+++...+... T Consensus 26 ~~GYei~~~i~~~~~~~~~i~~g~lY~~L~rL~~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~ 95 (116) T 3f8b_A 26 NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116) T ss_dssp BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 8899999999998399316897754999999997897689963157898765999898899999999999 No 75 >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Probab=28.29 E-value=29 Score=15.99 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=29.2 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCC--CCCCCEEECH Q ss_conf 651899999987778898999999998798122025--7753201161 Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHE--SGRKRDVLTP 67 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~--~grkew~lT~ 67 (110) ...+.-+|.+.|| ++-+.||+.|-..-=|-..++ ..-..|.+|. T Consensus 30 ~~~tA~~LAk~lg--~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~lt~ 75 (77) T 1qgp_A 30 KATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77) T ss_dssp SCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC T ss_pred CCHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC T ss_conf 7602999999969--888888999999998789530699899326057 No 76 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=27.90 E-value=30 Score=15.89 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=30.0 Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC Q ss_conf 76576518999999877788989999999987981 Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110) Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110) |++-.+++.++|.+..| .|...|.+.....||. T Consensus 30 ~~~i~~~si~elA~~~~--VS~aTi~Rf~kklGf~ 62 (107) T 3iwf_A 30 PHKVVNMTSQEIANQLE--TSSTSIIRLSKKVTPG 62 (107) T ss_dssp HHHHTTCCHHHHHHHHT--SCHHHHHHHHHHHSTT T ss_pred HHHHHHCCHHHHHHHHC--CCHHHHHHHHHHHCCC T ss_conf 99997765999998979--8998999999995889 No 77 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Probab=27.37 E-value=36 Score=15.45 Aligned_cols=62 Identities=6% Similarity=-0.030 Sum_probs=35.7 Q ss_pred CCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC Q ss_conf 76576518999999877788-9899999999879812202577---53201161135644564201 Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKP-SAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~-SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110) .++.+-+++++|.+.++-.. +.-++=+.|.+.||-....... +..-.+|++|++.-..+... T Consensus 45 ~~~~~~~~~~~la~~l~~~ks~vs~~l~~L~~~g~I~r~~~~~D~R~~~i~lTe~g~~~i~~~~~~ 110 (250) T 1p4x_A 45 HQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (250) T ss_dssp SCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH T ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 479999789999999688810699999999988898865798888858999899999999999999 No 78 >3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583} Probab=27.13 E-value=26 Score=16.26 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=35.0 Q ss_pred CCHHHHHHHHC----CCCCHHHHH---HHHHHCCCCHHHC-----CCCCCCEEECHHHHHHHHHHHHC Q ss_conf 18999999877----788989999---9999879812202-----57753201161135644564201 Q gi|254780987|r 24 YTPTQLGKKLA----TKPSAIKVN---KKLREWGFLLEEH-----ESGRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 24 ltPTqlGk~lg----~k~SA~~vN---~lL~~~GlQ~~~~-----~~grkew~lT~~G~k~g~~~~dt 79 (110) ..+-+|-+.+. -.+|.-.+- +.|.+.||-.... ...|+.+.+|++|+++...+... T Consensus 27 ~~GYei~~~l~~~~~~~~~~gslY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~~L~~~~~~ 94 (116) T 3hhh_A 27 TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116) T ss_dssp BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 88999999999848978997665999999998897699986436798846999898899999999999 No 79 >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Probab=26.97 E-value=11 Score=18.29 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=32.4 Q ss_pred CCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHH Q ss_conf 6576518999999877788-9899999999879812202577532011611356445 Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKP-SAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGG 74 (110) Q Consensus 19 ~~~~~ltPTqlGk~lg~k~-SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~ 74 (110) ..++.++.-+|.+.+|-.. +-...=+.|++.|.-.+.-+...+.|+||+.|++|-. T Consensus 16 ~~~~~~ds~ela~~~g~~~~~v~~~~~sL~~~g~li~~e~~~~~~~~LT~eG~~y~~ 72 (508) T 3l4g_A 16 ASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAR 72 (508) T ss_dssp --------------------------------------------------------- T ss_pred HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECHHHHHHHH T ss_conf 568987899999884999999999999997389859999998889988888999998 No 80 >2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71 Probab=23.48 E-value=43 Score=15.04 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=43.0 Q ss_pred CCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCCHHHC-CCCCCCEEECHHHHHHHHHHHH Q ss_conf 7651899999987778898-99999999879812202-5775320116113564456420 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSA-IKVNKKLREWGFLLEEH-ESGRKRDVLTPKGAKGGGRYFD 78 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA-~~vN~lL~~~GlQ~~~~-~~grkew~lT~~G~k~g~~~~d 78 (110) -...+--.|.||.+-++|. |++=.-|.++|+-.-.+ +-||-.=.+|+.|.......|- T Consensus 34 g~~wSLAkl~KRa~vpMStLRR~LT~L~~aGlv~~~~~edG~g~A~LT~~G~~lc~~LFg 93 (96) T 2obp_A 34 ATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQLFP 93 (96) T ss_dssp CCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHHCC T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHCC T ss_conf 995339999877089679999999998617805888635774010041668999999818 No 81 >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} Probab=22.84 E-value=44 Score=14.97 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=34.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEC Q ss_conf 657651899999987778898999999998798122025775320116 Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66 (110) Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT 66 (110) +..-.++...|-+.+|..++...+-++|...||+.+. ..+.|..| T Consensus 280 ~~~i~~~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~---~~~~~~V~ 324 (348) T 2cxi_A 280 PKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEI---SRGRAKLK 324 (348) T ss_dssp CEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE---ETTEEEEE T ss_pred CEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEE---CCCEEEEE T ss_conf 6479967999988868867999999999987997996---59828998 No 82 >1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Probab=22.68 E-value=45 Score=14.95 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=15.1 Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCC Q ss_conf 518999999877788989999999987981 Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110) Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110) ..++.+|...++..+|-..|...|.+.|+. T Consensus 77 ~~~~~~l~~~~~~~vS~~TV~r~L~~~g~~ 106 (141) T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRSGVI 106 (141) T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHTC-- T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCC T ss_conf 330899999873460499999999975860 No 83 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=21.91 E-value=46 Score=14.86 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.1 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHC Q ss_conf 765189999998777889899999999879812202 Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEH 56 (110) Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~ 56 (110) .+.++..+|+..+| +|.-+|...|..+--+...| T Consensus 39 ~e~ls~~EIA~~lg--iS~~aV~~~l~RA~~~L~~~ 72 (113) T 1xsv_A 39 LEDYSLSEIADTFN--VSRQAVYDNIRRTGDLVEDY 72 (113) T ss_dssp TSCCCHHHHHHHTT--CCHHHHHHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH T ss_conf 91999999999989--69999999999999999999 No 84 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=21.39 E-value=47 Score=14.80 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=30.6 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC-CCC Q ss_conf 5765189999998777889899999---99987981220257-753 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES-GRK 61 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~-grk 61 (110) +..|++-.+|++.|| +|-.+|.+ .|.+.|++++...+ ||+ T Consensus 16 ~g~~~SGe~la~~L~--iSR~aVwk~i~~L~~~G~~I~s~~~~GY~ 59 (321) T 1bia_A 16 NGEFHSGEQLGETLG--MSRAAINKHIQTLRDWGVDVFTVPGKGYS 59 (321) T ss_dssp TSSCBCHHHHHHHHT--SCHHHHHHHHHHHHHTTCCCEEETTTEEE T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCEEEECCCCEE T ss_conf 699597999999879--79999999999999779729997896759 No 85 >2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942} Probab=21.24 E-value=46 Score=14.87 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=32.9 Q ss_pred CCHHHHHHHHCC-----CCCHHHH---HHHHHHCCCCHHH-CC-----CCCCCEEECHHHHHHHHHHHHC Q ss_conf 189999998777-----8898999---9999987981220-25-----7753201161135644564201 Q gi|254780987|r 24 YTPTQLGKKLAT-----KPSAIKV---NKKLREWGFLLEE-HE-----SGRKRDVLTPKGAKGGGRYFDT 79 (110) Q Consensus 24 ltPTqlGk~lg~-----k~SA~~v---N~lL~~~GlQ~~~-~~-----~grkew~lT~~G~k~g~~~~dt 79 (110) ..+-+|-+.+.- .+|.-.+ =..|.+.|+-... .. ..||-+.+|++|+++...+... T Consensus 48 ~yGYeI~~~l~~~~~~~~is~gtLYp~L~rLe~~GlI~s~~~~~~~~Gr~RK~Y~IT~~Gr~~L~el~~e 117 (138) T 2e1n_A 48 SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 117 (138) T ss_dssp EEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 8899999999998399776876232899999988983888643467898736999898899999999999 No 86 >2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase, 2-codon SETS; HET: SAM; 2.50A {Aquifex aeolicus VF5} Probab=21.21 E-value=37 Score=15.40 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHHHCCCCHHHCCC-CCC Q ss_conf 88989999999987981220257-753 Q gi|254780987|r 36 KPSAIKVNKKLREWGFLLEEHES-GRK 61 (110) Q Consensus 36 k~SA~~vN~lL~~~GlQ~~~~~~-grk 61 (110) =++|..|-+-|.++||+++...+ |+| T Consensus 225 Yssag~VRr~L~~aGF~V~k~~G~g~K 251 (308) T 2e58_A 225 YSSSLSVRKSLLTLGFKVGSSREIGRK 251 (308) T ss_dssp SCCCHHHHHHHHHTTCEEECCCCC--- T ss_pred EEEHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 800499999999779989967889988 No 87 >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Probab=21.18 E-value=48 Score=14.78 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=33.1 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCC---CC--CCCEEECHHHHHH Q ss_conf 65189999998777889899999---9998798122025---77--5320116113564 Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHE---SG--RKRDVLTPKGAKG 72 (110) Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~---~g--rkew~lT~~G~k~ 72 (110) +..++++|.+.|| +|-.+|.+ .|.++||-..... .| ++.|.+|+.+..- T Consensus 27 ~~~~~~ela~~l~--is~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~~~ 83 (202) T 2p4w_A 27 RPYFVSELSRELG--VGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202) T ss_dssp SCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCEEE T ss_conf 9998999999989--09989999999999789517997642789617999807876245 No 88 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=20.53 E-value=50 Score=14.70 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=22.6 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 576518999999877788989999999987 Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110) Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110) +..-.|-++||+.+| +|.-+|-++-..+ T Consensus 35 ~~~~~Tl~eI~~~lg--iSreRVRQie~~A 62 (87) T 1tty_A 35 DGKPKTLEEVGQYFN--VTRERIRQIEVKA 62 (87) T ss_dssp TSSCCCHHHHHHHHT--CCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHH T ss_conf 999657999998959--8899999999999 No 89 >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1 1gtl_1 1sio_A 1sn7_A 1zvj_A 1siu_A 1zvk_A Probab=20.29 E-value=50 Score=14.67 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=34.5 Q ss_pred HHCCCC-CCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCCC Q ss_conf 515888-7657651899999987778-898999999998798122025775 Q gi|254780987|r 12 DINLPT-PNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESGR 60 (110) Q Consensus 12 ~~~LP~-~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~gr 60 (110) ++.-|. |.--.||||-|+.++++|. .+..+|-..|...||+......++ T Consensus 59 ~~~~p~s~~y~~~lt~~~~~~~~~ps~~~~~~v~~~L~~~Gl~v~~~~~~~ 109 (552) T 1t1e_A 59 ERQAALAPHARVHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAA 109 (552) T ss_dssp HHHTTSCTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHHHTTCEEEEEETTT T ss_pred HCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 435999975466889999998879499999999999998799557751689 Done!