HHSEARCH alignment of GI: 254780987 and SCOP domain: d3ctaa1

Alignment
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=92.48  E-value=0.042  Score=30.09  Aligned_cols=62  Identities=19%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf             88765765189999998777889899999---99987981220257753201161135644564201
Q gi|254780987|r   16 PTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT   79 (110)
Q Consensus        16 P~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt   79 (110)
                      +.-.+.+.+|+++|+++++  +|.-.|.+   .|.+.||-............+|++|+.....+...
T Consensus        14 ~~~~~~~~lt~~eLa~~l~--i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~~~   78 (85)
T d3ctaa1          14 AEASNRAYLTSSKLADMLG--ISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFAD   78 (85)
T ss_dssp             TTTSSEEECCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHHHHHHHHHHHH
T ss_conf             6015899988999999988--7887899999999987980431245543000789999999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]