RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>gnl|CDD|33878 COG4121, COG4121, Uncharacterized conserved protein [Function
           unknown].
          Length = 252

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 30  GKKLATKPSAIKVNKKLREWGFLLEEHES-GRKRDVL 65
              LAT  +AI V ++L + GF +E+    G+KR++L
Sbjct: 201 DPTLATFAAAIAVRRRLEQAGFTVEKRTGRGKKRELL 237


>gnl|CDD|147556 pfam05430, DUF752, Protein of unknown function (DUF752).  This
           family contains several uncharacterized bacterial
           proteins with no known function.
          Length = 124

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 30  GKKLATKPSAIKVNKKLREWGFLLEEHES-GRKRDVL 65
           G  LAT  SA  V + L   GF + +    GRKR++L
Sbjct: 83  GGTLATYSSAGFVRRGLIAAGFHVGKRPGFGRKREML 119


>gnl|CDD|143564 cd07455, CRD_Collagen_XVIII, Cysteine-rich domain of the variant
          3 of collagen XVIII (V3C18 ).  The cysteine-rich domain
          (CRD) is an essential part of the variant 3 of collagen
          XVIII (V3C18), which regulates major cellular functions
          such as the differential epithelial morphogenesis of
          early lung and kidney development. V3C18 is a 170 kD
          protein, which is proteolotically processed into the
          CRD-containing 50 kD glucoprotein precursor that binds
          Wnt3a through its CRD domain and suppresses the
          Wnt3a-induced stabilization of beta catenin.
          Full-length V3C18 is unable to inhibit Wnt signaling.
          Length = 123

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 15 LPTPNNLPYYTPTQLGKKLATKP------SAIKVNKKLREWGFLLEEH 56
          LP P++LP+ +  +LG +    P      S  +V   L EW +LLE  
Sbjct: 6  LPVPSSLPFCS--RLGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESG 51


>gnl|CDD|38321 KOG3111, KOG3111, KOG3111, D-ribulose-5-phosphate 3-epimerase
           [Carbohydrate transport and metabolism].
          Length = 224

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 85  DGTIVQQIKWHPPIVESLAPEFG 107
           DG  V  I + PP+VESL    G
Sbjct: 40  DGHFVPNITFGPPVVESLRKHTG 62


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,380,974
Number of extensions: 63312
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 7
Length of query: 110
Length of database: 6,263,737
Length adjustment: 76
Effective length of query: 34
Effective length of database: 4,621,453
Effective search space: 157129402
Effective search space used: 157129402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)