BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score =  225 bits (573), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60
           MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR
Sbjct: 1   MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60

Query: 61  KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR 110
           KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR
Sbjct: 61  KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR 110


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 262

 Score = 42.7 bits (99), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 4   VLGVNVLQDIN---LPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60
           + GV+ L+ ++   LP+ +N  Y T TQ+G++L     A  +NK L + G  + +   G 
Sbjct: 154 ITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGY 213

Query: 61  KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESL 102
           +    TPKG + GG+  D   +  +G+  QQ+KW+  ++ S 
Sbjct: 214 RP---TPKGEERGGKMCDVPMQHVEGS-TQQLKWNSNLLVSF 251


>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score = 29.6 bits (65), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 44  KKLREWGFLLEEHESGRKRDVL---TPKGAKGGGRYFDTGKKRSDGTIVQ 90
           K + + G ++EE  SG+K +V+   TP  A+ GG+  DTG    DG  +Q
Sbjct: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 22.3 bits (46), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 80  GKKRSDGTIVQQIKWHPPIVESL 102
           G  RS+  ++  + WHP   +S+
Sbjct: 231 GASRSNTALIAPVAWHPRYKDSV 253


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 20.8 bits (42), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 8  NVLQDINLPTPNNLPYYT 25
          N+   +++   N LPYYT
Sbjct: 15 NIFPFLSIAETNKLPYYT 32


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 1576

 Score = 20.4 bits (41), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 61  KRDVLTPKGAKGG 73
           K  V+ P GAKGG
Sbjct: 812 KNAVIVPVGAKGG 824


>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 20.4 bits (41), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 32  KLATKPSAIKVNKKLREWGFLLEEHES 58
           K+    SA  + K+L   GF+LE++++
Sbjct: 421 KMKKFSSADYIRKQLESKGFILEDYKN 447


>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 20.4 bits (41), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 17  TPNNLPYYTPTQLGKKLATKPSA 39
           T ++LP+ TP  LG ++    +A
Sbjct: 207 TLHSLPFVTPLSLGPRILRSDTA 229


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,617
Number of Sequences: 1233
Number of extensions: 2869
Number of successful extensions: 10
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 32 (16.9 bits)