Query gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 151
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 23785
Date Tue May 31 23:02:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780988.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m56_C Cytochrome C oxidase; m 25.7 35 0.0015 14.9 2.4 15 92-106 92-106 (266)
2 3bz1_T PSII-T, PSII-TC, photos 22.8 30 0.0013 15.3 1.6 13 130-142 8-20 (32)
3 1zvz_B Talin 1, metavinculin; 17.8 31 0.0013 15.2 0.8 17 62-78 3-19 (26)
4 1p58_D Envelope protein M; fla 15.2 60 0.0025 13.5 2.3 53 72-147 8-60 (75)
5 1fft_C Ubiquinol oxidase; elec 12.5 20 0.00082 16.4 -1.4 15 106-120 159-173 (204)
6 1xkm_A Distinctin chain A; por 10.1 87 0.0037 12.6 1.4 11 85-95 7-17 (26)
7 1h2c_A Matrix protein VP40; vi 8.5 59 0.0025 13.6 -0.1 15 60-74 90-104 (140)
8 1es6_A Matrix protein VP40; be 7.4 73 0.0031 13.0 -0.0 16 60-75 114-129 (296)
9 3geb_A EYES absent homolog 2; 7.0 1.2E+02 0.005 11.8 2.8 94 2-96 19-125 (274)
10 1wur_A GTP cyclohydrolase I; b 5.9 68 0.0029 13.2 -0.8 37 31-67 12-67 (220)
No 1
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=25.73 E-value=35 Score=14.88 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789999999999999
Q gi|254780988|r 92 RPFTTLFWIILYPLL 106 (151)
Q Consensus 92 rp~tt~fwii~ypll 106 (151)
-=|..+||-..+.-+
T Consensus 92 m~F~~~f~ay~~~~~ 106 (266)
T 1m56_C 92 MFFSAWFWSFFKHAL 106 (266)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999973
No 2
>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T*
Probab=22.76 E-value=30 Score=15.27 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999887657
Q gi|254780988|r 130 DIIACILGFWFTD 142 (151)
Q Consensus 130 ~iiacilgfw~td 142 (151)
-|.|||.|..|-.
T Consensus 8 ~i~acii~lfffa 20 (32)
T 3bz1_T 8 FIFACIIALFFFA 20 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 3
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus}
Probab=17.79 E-value=31 Score=15.22 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=13.5
Q ss_pred CEEHHHHHHHHHHHHHH
Q ss_conf 60034444211177775
Q gi|254780988|r 62 PVRLARLQNQANEDQFE 78 (151)
Q Consensus 62 pvrlar~~~qaned~~~ 78 (151)
-+|-|||-+||..|-+.
T Consensus 3 mvrqarilaqatsdlvn 19 (26)
T 1zvz_B 3 MVRQARILAQATSDLVN 19 (26)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999998899999
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from TICK-borne encephalitis virus, membrane protein M, cryo-EM; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=15.23 E-value=60 Score=13.52 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1177775212388878889978999999999999998774304326474455333478899999988765789876
Q gi|254780988|r 72 ANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQR 147 (151)
Q Consensus 72 aned~~~~~~k~~~~f~alirp~tt~fwii~yplliww~v~~g~~~~dpltll~pftq~iiacilgfw~td~ivq~ 147 (151)
++.+-.-|+.+||+.-.+--.---.--||+--|.. -+.||++|....++..||
T Consensus 8 ~~~~L~tr~~~Wl~~~~~~~~l~rvE~WilRNpg~-----------------------al~a~~l~w~lGss~~Qr 60 (75)
T 1p58_D 8 VGMGLETRTETWMSSEGAWKHAQRIETWILRHPGF-----------------------TIMAAILAYTIGTTHFQR 60 (75)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH-----------------------HHHHHHHHHHHCCCHHHH
T ss_conf 66765478870536715999999999999958349-----------------------999999999976871799
No 5
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=12.45 E-value=20 Score=16.36 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=6.5
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 998774304326474
Q gi|254780988|r 106 LIWWGVEKGYLTKDP 120 (151)
Q Consensus 106 liww~v~~g~~~~dp 120 (151)
.+.+...+|.++++.
T Consensus 159 ~~~~r~~~~~~~~~~ 173 (204)
T 1fft_C 159 VLMVQIARRGLTSTN 173 (204)
T ss_dssp HHHHHHHHTCCCTTC
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999836999531
No 6
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=10.09 E-value=87 Score=12.58 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 87888997899
Q gi|254780988|r 85 IFFNALIRPFT 95 (151)
Q Consensus 85 ~~f~alirp~t 95 (151)
-||+|||..+.
T Consensus 7 pgftaliktlr 17 (26)
T 1xkm_A 7 PGFTALIKTLR 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 76899999987
No 7
>1h2c_A Matrix protein VP40; virus/viral protein, filovirus, ebola virus, matrix protein VP40, assembly, budding; 1.6A {Ebola virus} SCOP: b.31.1.1
Probab=8.46 E-value=59 Score=13.58 Aligned_cols=15 Identities=47% Similarity=0.640 Sum_probs=12.7
Q ss_pred CCCEEHHHHHHHHHH
Q ss_conf 786003444421117
Q gi|254780988|r 60 ETPVRLARLQNQANE 74 (151)
Q Consensus 60 ~~pvrlar~~~qane 74 (151)
+.|.|+-|+.|||--
T Consensus 90 ~hplr~lr~gnqaf~ 104 (140)
T 1h2c_A 90 DHPLRLLRIGNQAFL 104 (140)
T ss_dssp TCSSHHHHTSEEEEE
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 515799987059999
No 8
>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} SCOP: b.31.1.1 b.31.1.1 PDB: 1h2d_A
Probab=7.36 E-value=73 Score=13.04 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=12.7
Q ss_pred CCCEEHHHHHHHHHHH
Q ss_conf 7860034444211177
Q gi|254780988|r 60 ETPVRLARLQNQANED 75 (151)
Q Consensus 60 ~~pvrlar~~~qaned 75 (151)
+.|.||-|+.|||--.
T Consensus 114 dHPLRlLR~GNQAFlQ 129 (296)
T 1es6_A 114 DHPLRLLRIGNQAFLQ 129 (296)
T ss_dssp TCSSHHHHHSEEEEEH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5246898751499997
No 9
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=7.03 E-value=1.2e+02 Score=11.81 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH--HHHCCCCCEEHHHH
Q ss_conf 256644899999998312-----------79999999633430432542101200344123009--97215786003444
Q gi|254780988|r 2 ISFLTGSIARFFIKFVPS-----------LFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL--KALESETPVRLARL 68 (151)
Q Consensus 2 isfl~g~~~rf~~~fvps-----------~f~~~~ey~~k~~sie~d~l~le~ak~~sttq~dl--~~~~~~~pvrlar~ 68 (151)
-|+|+|+-+.-|-|=.+. .|++..+|.--++--|+|...++-+..+-..| || -...+|.+---+--
T Consensus 19 ~slL~g~ya~~f~KD~~~~~~lg~r~E~~I~~laD~~fFf~dlEecdq~hIdd~~~dDng~-DLs~y~F~~Dgf~~~~~~ 97 (274)
T 3geb_A 19 HSLLTGTFASRYGKDTTTSVRIGLMMEEMIFNLADTHLFFNDLEDCDQIHVDDVSSDDNGQ-DLSTYNFSADGFHSSAPG 97 (274)
T ss_dssp HHHHSSHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCCCSSTTTTGGGCCCC-CCSSCCSSSSCC------
T ss_pred HHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHCCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 9986107687706873778789999999999998877400428666976765640156766-654366555677888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4211177775212388878889978999
Q gi|254780988|r 69 QNQANEDQFERESKAMIFFNALIRPFTT 96 (151)
Q Consensus 69 ~~qaned~~~~~~k~~~~f~alirp~tt 96 (151)
.|-.-...+.+|+.||.-....-|-..-
T Consensus 98 ~n~~~~~~~~ggvdwmRKLA~ryr~Ike 125 (274)
T 3geb_A 98 ANLCLGSGVHGGVDWMRKLAFRYRRVKE 125 (274)
T ss_dssp ----------CCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5423344666641789999999999999
No 10
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=5.88 E-value=68 Score=13.20 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHCC-------------------CCCEEHHH
Q ss_conf 43043254210120034412300997215-------------------78600344
Q gi|254780988|r 31 EKSIEHDRLRLEIAKIQSTTQVDLKALES-------------------ETPVRLAR 67 (151)
Q Consensus 31 ~~sie~d~l~le~ak~~sttq~dl~~~~~-------------------~~pvrlar 67 (151)
+.+.|-....++....+-++++|+..+++ +||-|.|+
T Consensus 12 ~~~~~~k~~~~~d~~~~~~~~~d~~~ie~av~~iL~~lGeDp~regL~~TP~Rvak 67 (220)
T 1wur_A 12 RGSMERKMVELEDTGLTFATEVDLERLQALAAEWLQVIGEDPGREGLLKTPERVAK 67 (220)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHTTCCTTSGGGTTHHHHHHH
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 10245411346555554477336999999999999996799985332026999999
Done!