RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
(151 letters)
>gnl|CDD|34246 COG4626, COG4626, Phage terminase-like protein, large subunit
[General function prediction only].
Length = 546
Score = 27.2 bits (60), Expect = 1.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 124 LAPFTQDIIACILGFWFTDTIVQR 147
L P+ + I+A + GF+ T ++R
Sbjct: 62 LEPWQKFIVAALFGFYDKQTGIRR 85
>gnl|CDD|35451 KOG0230, KOG0230, KOG0230, Phosphatidylinositol-4-phosphate 5-kinase
and related FYVE finger-containing proteins [Signal
transduction mechanisms].
Length = 1598
Score = 27.3 bits (60), Expect = 1.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 13 FIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRL 65
FIKF P+ F L E SI +AKI QV +K+ +S ++
Sbjct: 1392 FIKFAPAYFKYLTE------SISQKSPTC-LAKILGIYQVSVKSPKSGKETKM 1437
>gnl|CDD|37704 KOG2493, KOG2493, KOG2493, Na+/Pi symporter [Inorganic ion
transport and metabolism].
Length = 512
Score = 26.8 bits (59), Expect = 2.4
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 12/138 (8%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
+IS G IA F + F + + I + K + E++ E
Sbjct: 236 LISVGLGVIAAFIVYFF--VRPFMRRKINRGKETDEAPPVSEVSGSS-------ARRELG 286
Query: 61 TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
V + + + R + P T+ + L W + + +
Sbjct: 287 KSVEIKEESAVESTVKNLRIQNTSAITKS---PSTSESQGKIRKLEKWLWPDVTRVDSEE 343
Query: 121 LTLLAPFTQDIIACILGF 138
++ L Q + AC F
Sbjct: 344 VSRLFSTLQVLTACFASF 361
>gnl|CDD|38718 KOG3508, KOG3508, KOG3508, GTPase-activating protein [General
function prediction only].
Length = 932
Score = 26.1 bits (57), Expect = 3.7
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 28/90 (31%)
Query: 17 VPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQ 76
PSLFNL +EY + R IAK+ LQN AN +
Sbjct: 430 SPSLFNLAQEYPSPTTA----RTLTLIAKV---------------------LQNLANFSK 464
Query: 77 FERESKAMIFFNALIR---PFTTLFWIILY 103
F + K M F N + LF +
Sbjct: 465 FGGKEKRMRFMNEFLEHEWEAMKLFLKRIS 494
>gnl|CDD|38459 KOG3249, KOG3249, KOG3249, Uncharacterized conserved protein
[Function unknown].
Length = 181
Score = 26.2 bits (57), Expect = 4.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 86 FFNALIRPFTTLFWIILYPLLIWW 109
F +L L W +L P+
Sbjct: 100 FSLSLKMWVIVLLWFVLAPIAHRL 123
>gnl|CDD|38307 KOG3097, KOG3097, KOG3097, Predicted membrane protein [Function
unknown].
Length = 390
Score = 26.1 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 100 IILYPLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGFW 139
+L PL I+ G+E+ +L D FT+ +AC LG
Sbjct: 278 RLLVPLTIFSGLEQAFLCAD-------FTKAYVACALGVS 310
>gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 1080
Score = 25.7 bits (56), Expect = 4.9
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 3 SFLTGSIARFFIKFVPSLFNLLEE------------YIMKEKS--IEHDRLRLEIAKIQS 48
SF+T + ++ FV FN L+E Y K+ ++HDR E Q
Sbjct: 204 SFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQE 263
Query: 49 TTQVDLKALE 58
T + L+ LE
Sbjct: 264 YTLIKLEVLE 273
>gnl|CDD|185743 cd09002, GH43_XYL_3, Glycosyl hydrolase family 43,
beta-D-xylosidase. This glycosyl hydrolase family 43
(GH43) includes enzymes that have been characterized to
have beta-1,4-xylosidase (beta-D-xylosidase;xylan
1,4-beta-xylosidase; EC 3.2.1.37) activity. They are
part of an array of hemicellulases that are involved in
the final breakdown of plant cell-wall whereby they
degrade xylan. They hydrolyze beta-1,4 glycosidic bonds
between two xylose units in short xylooligosaccharides.
These are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 280
Score = 25.5 bits (56), Expect = 6.3
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 108 WW----GVEKGYLTKDPLTLLAP 126
WW EKGYLT TLL P
Sbjct: 247 WWMVYHAYEKGYLTLGRQTLLEP 269
>gnl|CDD|36288 KOG1070, KOG1070, KOG1070, rRNA processing protein Rrp5 [RNA
processing and modification].
Length = 1710
Score = 25.4 bits (55), Expect = 6.9
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 7 GSIARF-----FIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESET 61
G++ F+ F L M + + D + + V++ +
Sbjct: 605 GTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRM 664
Query: 62 PVRLARLQNQANEDQFER 79
P+ L R + A
Sbjct: 665 PLGL-RASSCARACVKRS 681
>gnl|CDD|35152 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 25.1 bits (54), Expect = 7.3
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 3 SFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETP 62
+ + +F F L N+ +E+ + +E + K SE
Sbjct: 302 AVANKLVKVYFSIFRKFLENIPKEHRVNSNILEEKLV-----------IGLGKNKGSEKI 350
Query: 63 VRLARLQNQANEDQFERESKAMIFFNALIRPFTTLF 98
+ ++ + + ++ A++ PF LF
Sbjct: 351 CKTEIIRKEVHTEKNSFYGSAVLTGCNRAGPFALLF 386
>gnl|CDD|36049 KOG0831, KOG0831, KOG0831, Acyl-CoA:diacylglycerol acyltransferase
(DGAT) [Lipid transport and metabolism].
Length = 334
Score = 25.2 bits (55), Expect = 7.6
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 83 AMIFFNALIRPFTTLFWIILYPLLIWW 109
+I FN T FW + +W
Sbjct: 31 PLISFNVPFALLFTRFWPLAILYAVWL 57
>gnl|CDD|113049 pfam04262, Glu_cys_ligase, Glutamate-cysteine ligase. Family of
bacterial f glutamate-cysteine ligases (EC:6.3.2.2) that
carry out the first step of the glutathione biosynthesis
pathway.
Length = 377
Score = 25.1 bits (55), Expect = 8.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 66 ARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILY 103
L NE++ R+ ++ +F LIR F WI+ Y
Sbjct: 158 TALFRAQNEEKSARDFQSAAYFR-LIRNFYRYGWILPY 194
>gnl|CDD|34590 COG4985, COG4985, ABC-type phosphate transport system, auxiliary
component [Inorganic ion transport and metabolism].
Length = 289
Score = 25.0 bits (54), Expect = 8.1
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 22 NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE------SETPVRLARLQNQAN-- 73
+ + E ++ + + +RLRLE ++Q Q+D + + SE RLA+LQ + +
Sbjct: 181 DKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDAL 240
Query: 74 EDQFERESKAMIFFNALIRPFT 95
+ ER+ ++
Sbjct: 241 RAELERQFLYLVDMQGETVSVP 262
>gnl|CDD|37131 KOG1920, KOG1920, KOG1920, IkappaB kinase complex, IKAP component
[Transcription].
Length = 1265
Score = 24.9 bits (54), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKA 56
F L E + S ++ L L+I +I+S +V L A
Sbjct: 24 FILSPELVTVASSTINELLGLKIFEIESVGKVRLVA 59
>gnl|CDD|146951 pfam04559, Herpes_UL17, Herpesvirus UL17 protein. UL17 protein is
required for DNA cleavage and packaging in herpes
viruses. It has been shown to associate with immature
B-type capsids, and is required for the the localisation
of capsids and capsid proteins to the intranuclear sites
where viral DNA is cleaved and packaged. In the virion,
UL17 is a component of the tegument, which is a protein
layer surrounding the viral capsid.
Length = 498
Score = 25.1 bits (55), Expect = 9.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 98 FWIILYPLLIWWGVEKGYLTKDPLTLLAP 126
F+++ Y WG G + D L+
Sbjct: 292 FYVVWYENSSAWG---GRSSLDLEDSLSR 317
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.328 0.142 0.428
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,851,100
Number of extensions: 91732
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 51
Length of query: 151
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,426,972
Effective search space: 292180152
Effective search space used: 292180152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)