RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
          Length = 373

 Score = 28.1 bits (63), Expect = 0.89
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 20  LFNLLEEYIMKEKSIEHDRLRLE-IAKIQSTTQVDLKALESETPVRLARLQNQA 72
           L N L  Y  ++    +D++R++  AK+   ++   K  + E+ + L  L+N+ 
Sbjct: 300 LANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKL-LVALRNRV 352


>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
          Length = 1066

 Score = 26.0 bits (57), Expect = 4.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 25 EEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANED 75
          E+ I+ E+ +E  + + E AK +   +  LKA + E     A+LQ Q   D
Sbjct: 9  EKKILTEEELERKKKKEEKAKEKELKK--LKAAQKE---AKAKLQAQQASD 54


>gnl|CDD|163318 TIGR03545, TIGR03545, conserved hypothetical protein TIGR03545.
           This model represents a relatively rare but broadly
           distributed uncharacterized protein family, distributed
           in 1-2 percent of bacterial genomes, all of which have
           outer membranes. In many of these genomes, it is part of
           a two-gene pair.
          Length = 555

 Score = 25.4 bits (56), Expect = 5.3
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 37  DRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFT- 95
           + L+ +  ++++    DL  L+      L RL+N+      + ++ A+  F   IR +  
Sbjct: 240 NDLQNDKKQLKA----DLAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQ 295

Query: 96  TLFW 99
               
Sbjct: 296 KFLK 299


>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
          Length = 444

 Score = 25.7 bits (56), Expect = 5.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 96  TLFWIILYPLLIW 108
           +LFWII YP++ W
Sbjct: 395 SLFWIIWYPMVYW 407


>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF.  Members of
           this protein family are IcmF homologs and tend to be
           associated with type VI secretion systems.
          Length = 1169

 Score = 25.4 bits (56), Expect = 7.0
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 10/49 (20%)

Query: 96  TLFWIILYPLLIWWGVEKGYLTKDPLTLLAPFTQD-----IIACILGFW 139
           +L  +IL  +LIWW    G L    +    P         IIA +L  W
Sbjct: 2   SLLGLILLCILIWWA---GPLL--AVGDYKPLESVWARLLIIAVLLLVW 45


>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional.
          Length = 489

 Score = 25.2 bits (55), Expect = 7.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 98  FWIIL-YPLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGF--------WFTDT 143
           FW+++  P+L       G   KD L++   FT  +  C LGF        WF D 
Sbjct: 320 FWVVVASPILAGIYTHLGSKGKD-LSMPMKFTLGMFLCSLGFLTAAAAGMWFADA 373


>gnl|CDD|184622 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 444

 Score = 25.1 bits (56), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 64  RLARLQNQANEDQFERESKAMI 85
           RL RLQ   N+ Q    S++M+
Sbjct: 361 RLQRLQALINQQQMAF-SRSMV 381


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,475,731
Number of extensions: 147756
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 34
Length of query: 151
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,157,793
Effective search space: 274414338
Effective search space used: 274414338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)