HHsearch results for GI: 254780989 and protein with PDBid: 1kzf_A
>1kzf_A Acyl-homoserinelactone synthase ESAI; alpha-beta, autoinducer synthase, quorum sensing, bacterial pathogenesis, ligase; 1.80A {Pantoea stewartii subsp} SCOP: d.108.1.3 PDB: 1k4j_A
Probab=97.89 E-value=1.6e-05 Score=52.17 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=84.8
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHCH-HCCCCCCCEEEEEEEECCEEEEEEEEEEEEE--------
Q ss_conf 7513797578999999999727876667561520254120-0025766548999989878647999999886--------
Q gi|254780989|r 15 TFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNV-EEPLSFVRLMSFVCRDGDRIVGAIRATPIQI-------- 85 (185)
Q Consensus 15 ~IR~a~~~D~~aI~~L~~~aF~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~Vae~d~~iVG~i~~~~~~~-------- 85 (185)
.++.-.++..+++.+|-.++|-....... . ..+.. .+..+.....++|+.++|++||++++.|.+-
T Consensus 28 ~~~~l~~~~~ee~~rlR~~Vf~~elgw~~----~-~~~g~E~D~fD~~~~~ylv~~~~g~vvG~~RLlpt~~p~~l~~~f 102 (230)
T 1kzf_A 28 SYEELQTTRSEELYKLRKKTFSDRLGWEV----I-CSQGMESDEFDGPGTRYILGICEGQLVCSVRFTSLDRPNMITHTF 102 (230)
T ss_dssp EHHHHHHC------------CHHHHHHHH----H-HHTSCCCCTTCSTTCEEEEEEETTEEEEEEEEEETTSCCCCCCCT
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHCCCCC----C-CCCCCEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHCCH
T ss_conf 58668977999999999999987429988----9-999768307899997799997099799999727899985111003
Q ss_pred --------CCCCEEEEEEEEECHHHHCCC------HHHHHHHHHHHHHHHCCCCEEEEECCHH---HHHHCCCEE
Q ss_conf --------067848998677525461599------8999999999999988997999950832---543138587
Q gi|254780989|r 86 --------GKYKGFLRGPLGVLSEYRKRG------IGSRLAYMSFMAIKNSGAEFVLIDAKHD---WHKHLGFKK 143 (185)
Q Consensus 86 --------~~~~~~~l~~laV~P~~qg~G------iG~~Li~~~l~~a~~~G~~~v~l~~~~~---~Y~r~GF~~ 143 (185)
.....+.++.++|+|+++++. +...|+..+++.+.+.|++.++...++. +|+|+||..
T Consensus 103 ~~l~~~~~~~~~i~E~SRfaV~~~~r~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r~G~~~ 177 (230)
T 1kzf_A 103 QHCFSDVTLPAYGTESSRFFVDKARARALLGEHYPISQVLFLAMVNWAQNNAYGNIYTIVSRAMLKILTRSGWQI 177 (230)
T ss_dssp HHHHTTSCCCSSCEEEEEEEECHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTCSEEEEEEEHHHHHHHHHHCCCC
T ss_pred HHHCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCE
T ss_conf 554378778987316678897031235655444557999999999999988998899997799999999869962