HHsearch results for GI: 254780989 and protein with PDBid: 3gkr_A
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1 UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A
Probab=93.91 E-value=0.33 Score=26.28 Aligned_cols=122 Identities=7% Similarity=-0.007 Sum_probs=71.5
Q ss_pred CCCEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHCHHCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCC
Q ss_conf 0020751379-757899999999972787666756152025412000257665489999898786479999998860678
Q gi|254780989|r 11 LEGLTFANEQ-RVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYK 89 (185)
Q Consensus 11 ~~~l~IR~a~-~~D~~aI~~L~~~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Vae~d~~iVG~i~~~~~~~~~~~ 89 (185)
-.|++++..+ .+|.....++........ .. ......+... +.+.........+++..+|++||...+.. .+..
T Consensus 179 k~g~~~~~~~~~~dl~~~~~~~~~~~~r~-g~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~g~~va~~l~~~---~~~~ 252 (336)
T 3gkr_A 179 RDGVEVHSGNSATELDEFFKTYTTMAERH-GI-THRPIEYFQR-MQAAFDADTMRIFVAEREGKLLSTGIALK---YGRK 252 (336)
T ss_dssp HTTEEEEEECSHHHHHHHHHHHHHHHHHH-TC-CCCCHHHHHH-HHHHSCTTTEEEEEEEETTEEEEEEEEEE---ETTE
T ss_pred HCCCEEEECCCHHHHHHHHHHHHHHHHHC-CC-CCCCHHHHHH-HHHHCCCCCEEEEEEEECCEEEEEEEEEE---ECCE
T ss_conf 75978996587277789999999999853-66-6799999999-99746788569999970996999999999---8999
Q ss_pred EEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECC-H--------HHHHHCC
Q ss_conf 4899867752546159989999999999999889979999508-3--------2543138
Q gi|254780989|r 90 GFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAK-H--------DWHKHLG 140 (185)
Q Consensus 90 ~~~l~~laV~P~~qg~GiG~~Li~~~l~~a~~~G~~~v~l~~~-~--------~~Y~r~G 140 (185)
..++ --+.++++ +.+-+..|+-++|+.++++|+...=+.|- + .|-++||
T Consensus 253 ~~~~-~~~s~~~~-~~~~~~ll~~~~i~~a~~~G~~~~DfgG~~~~~~~~gl~~FK~~fg 310 (336)
T 3gkr_A 253 IWYM-YAGSMDGN-TYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFV 310 (336)
T ss_dssp EEEE-EEEECSSC-CTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCHHHHHHHHHC
T ss_pred EEEE-EEEECHHH-HCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCC
T ss_conf 9999-70215554-5165599999999999987997998089878889952899864659