RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>gnl|CDD|32967 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 79.9 bits (197), Expect = 3e-16
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 19 EQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAI 78
E D A++ + +AF +E + + + E +S V D +VG I
Sbjct: 9 ETPADIPAIEALTREAFGPGREA-------KLVDKLREGGRPDLTLSLVAEDDGEVVGHI 61
Query: 79 RATPIQIG--KYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHDWH 136
+P+ +G + PL V EY+ +GIGS L A++ +GA V++ ++
Sbjct: 62 LFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPTYY 121
Query: 137 KHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGK 177
GF+ ++ YA G +L + +E G
Sbjct: 122 SRFGFEPAAGAKL-YAPGPVPDERFLALELGDGALEGPSGT 161
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 65 SFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRL 111
V D IVG +P G ++ G L VL EYR +GIGS L
Sbjct: 1 FLVAEDDGEIVGFASLSPDGSGGDTAYI-GDLAVLPEYRGKGIGSAL 46
>gnl|CDD|144249 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 43.0 bits (102), Expect = 5e-05
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 69 RDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVL 128
+ +VG + I + G L V EYR +GIG+ L + G + +
Sbjct: 2 EEDGELVGFASLSIIDEEGNVAEIEG-LAVDPEYRGKGIGTALLEALEEYARELGLKRIE 60
Query: 129 IDAKHD------WHKHLGFK 142
++ D ++ LGFK
Sbjct: 61 LEVLEDNEAAIALYEKLGFK 80
>gnl|CDD|38349 KOG3139, KOG3139, KOG3139, N-acetyltransferase [General function
prediction only].
Length = 165
Score = 38.4 bits (89), Expect = 0.001
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 22 VDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLS------FVRL---MSFVCRDGD 72
V +++ L E + + + ++ EP S FV F+ D
Sbjct: 6 ESDEWVLAEVIRPSLYPAEEYLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEK 65
Query: 73 RI-VGAIRATPIQIGKYKGFLRGPLGVL---SEYRKRGIGSRLAYMSFMAIKNSGAEFVL 128
VGAI ++ ++ LRG + +L SEYR +GIG L + A+++ G V+
Sbjct: 66 GDTVGAI---VCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVV 122
Query: 129 ID------AKHDWHKHLGFKKPHQHQIRYAHGGGAA 158
++ + ++ LGFK+ + RY G A
Sbjct: 123 LETEVTNLSALRLYESLGFKRDKR-LFRYYLNGMDA 157
>gnl|CDD|30804 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 32.7 bits (73), Expect = 0.057
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 12/157 (7%)
Query: 17 ANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVG 76
A + + VA+ + + F + + K + E L ++VG
Sbjct: 17 AINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQA-PELLLVAETGGLDGLLDGKVVG 75
Query: 77 AIRATPIQIGKYKGFLRGP---LGVLSEYRKRGIGSRLAYMSFMAIKNSG-AEFVLIDAK 132
+ + G+ G L V EYR RGIG L + ++ G A+ ++++ +
Sbjct: 76 FLLVRVV-DGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVR 134
Query: 133 HD------WHKHLGFKKPHQHQIRYAHGGGAATDWLV 163
++ LGF+ + YA G G A L
Sbjct: 135 ESNEAAIGLYRKLGFEVVKIRKNYYADGNGDALLMLK 171
>gnl|CDD|38348 KOG3138, KOG3138, KOG3138, Predicted N-acetyltransferase [General
function prediction only].
Length = 187
Score = 30.0 bits (67), Expect = 0.44
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 48 KYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGP-------LGVLS 100
YV + LS L + + VGA+ I+ + L G LGVL
Sbjct: 41 SYVDKFYPDVLSNGDLTQLAYYN-EIAVGAVACKLIKFVQNAKRLFGNRVIYILSLGVLP 99
Query: 101 EYRKRGIGSRLA 112
YR +GIGS+L
Sbjct: 100 RYRNKGIGSKLL 111
>gnl|CDD|31439 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 29.1 bits (65), Expect = 0.71
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 28 DEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGK 87
D + + E+ +L + EE F + +++G A + +
Sbjct: 10 DIPAILELIRPLELQGILLRRSREQLEEEIDDFT-----IIERDGKVIGCA-ALHPVLEE 63
Query: 88 YKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE--FVLIDAKHDWHKHLGFK 142
G LR L V +YR G G RL + G + FVL ++ GF
Sbjct: 64 DLGELRS-LAVHPDYRGSGRGERLLERLLADARELGIKELFVLTTRSPEFFAERGFT 119
>gnl|CDD|112855 pfam04057, Rep-A_N, Replication factor-A protein 1, N-terminal
domain.
Length = 100
Score = 26.9 bits (60), Expect = 3.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 32 VKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVC---RDGDRIV 75
KA L+TQ L+ V + + S V+L + ++G RI+
Sbjct: 50 SKAMLATQ------LNSLVISGKLQNGSIVQLTDYTVNDIKEGRRIL 90
>gnl|CDD|133286 cd01886, EF-G, Elongation factor G (EF-G) subfamily. Translocation
is mediated by EF-G (also called translocase). The
structure of EF-G closely resembles that of the complex
between EF-Tu and tRNA. This is an example of molecular
mimicry; a protein domain evolved so that it mimics the
shape of a tRNA molecule. EF-G in the GTP form binds to
the ribosome, primarily through the interaction of its
EF-Tu-like domain with the 50S subunit. The binding of
EF-G to the ribosome in this manner stimulates the
GTPase activity of EF-G. On GTP hydrolysis, EF-G
undergoes a conformational change that forces its arm
deeper into the A site on the 30S subunit. To
accommodate this domain, the peptidyl-tRNA in the A site
moves to the P site, carrying the mRNA and the
deacylated tRNA with it. The ribosome may be prepared
for these rearrangements by the initial binding of EF-G
as well. The dissociation of EF-G leaves the ribosome
ready to accept the next aminoacyl-tRNA into the A site.
This group contains both eukaryotic and bacterial
members.
Length = 270
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/36 (25%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 ANEQRVDQVA-VDEVMVKAFLSTQEITDDVLHKYVR 51
A E+ ++ +A D+ +++ +L +EIT++ + +R
Sbjct: 199 AREELIETLAEFDDELMEKYLEGEEITEEEIKAAIR 234
>gnl|CDD|38445 KOG3235, KOG3235, KOG3235, Subunit of the major N
alpha-acetyltransferase [General function prediction
only].
Length = 193
Score = 26.1 bits (57), Expect = 5.8
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 64 MSFVCRD-GDRIVGAIRAT---PIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMA- 118
+S+V D +IVG + A G + L V YR+ G+ +L + A
Sbjct: 42 LSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITS-LAVKRSYRRLGLAQKLMNQASRAM 100
Query: 119 IKNSGAEFVLI-------DAKHDWHKHLGFKKPHQHQIRYAHGGGA 157
++ A++V + A H + LGF YA G A
Sbjct: 101 VEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDA 146
>gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 26.2 bits (57), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 69 RDGDRIVGAIRAT-PIQIGKYKGF 91
RDGDRI IR + Q G+ G
Sbjct: 254 RDGDRIYAVIRGSAVNQDGRSNGL 277
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 26.1 bits (57), Expect = 6.6
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 13 GLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGD 72
G+ F + ++V + ++ A + + RN L L +D
Sbjct: 80 GILFQDALLFPHLSVGQNLLFA------LPATLKGNARRNAANAALERSGLDGAFHQDPA 133
Query: 73 RIVGAIRA 80
+ G RA
Sbjct: 134 TLSGGQRA 141
>gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits..
Length = 421
Score = 25.5 bits (56), Expect = 9.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 69 RDGDRIVGAIRATPI-QIGKYKG 90
RDGDRI IR + + Q G+ KG
Sbjct: 250 RDGDRIYAVIRGSAVNQDGRTKG 272
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,275,654
Number of extensions: 117284
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 18
Length of query: 185
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,362,145
Effective search space: 423128065
Effective search space used: 423128065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)