RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>gnl|CDD|179611 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 31.4 bits (72), Expect = 0.15
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRG---PLGVLSEYRKRGIGSRL 111
V G +VG + +G Y G RG L V ++R RGIG L
Sbjct: 48 LVAEVGGEVVGTV------MGGYDGH-RGWAYYLAVHPDFRGRGIGRAL 89
>gnl|CDD|150404 pfam09724, DUF2036, Uncharacterized conserved protein (DUF2036).
This family of proteins includes members ranging in size
from approximately 300 to 460 residues. There are a
number of well-conserved domains along the length.
Length = 325
Score = 30.0 bits (68), Expect = 0.36
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 14 LTFANEQRVDQVAVD-EVMVKAFLS---TQEITDDVLHKYVRNNVEEPLSFVRLMSFVCR 69
L + D V + +V+A +E+ + VL+K+ EE F VCR
Sbjct: 175 LVLLDSNSWDLDEVSLDEVVEALRPSEYPEEVIETVLNKFGTKESEEGDRFALDEDKVCR 234
Query: 70 D-GDRIVGAIRATPIQI 85
++++ A + +
Sbjct: 235 WFAEQLLQKGLAGKMNL 251
>gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 29.4 bits (67), Expect = 0.58
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 27/58 (46%)
Query: 66 FVCRDGDRIVGA------------IRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRL 111
+V + IVG IR+ L V +YR +GIG L
Sbjct: 44 YVAEEEGEIVGCCALHILWEDLAEIRS---------------LAVSEDYRGQGIGRML 86
>gnl|CDD|182261 PRK10137, PRK10137, alpha-glucosidase; Provisional.
Length = 786
Score = 28.2 bits (63), Expect = 1.4
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 140 GFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSLRRE 183
GF Q +Y GG +DW V +N + + SL +E
Sbjct: 534 GFIDKEQLD-KYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQE 576
>gnl|CDD|182877 PRK10975, PRK10975, TDP-fucosamine acetyltransferase; Provisional.
Length = 194
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 94 GPLGVLSEYRKRGIGSRL 111
G L V + RGIG+RL
Sbjct: 130 GLLAVFPGAQGRGIGARL 147
>gnl|CDD|183334 PRK11836, PRK11836, deubiquitinase; Provisional.
Length = 403
Score = 26.9 bits (59), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 43 DDVLHKYVRNNVEEPLSFVRLMSFVC 68
+D+L+ VRN E LS +RL+ C
Sbjct: 65 EDILYHIVRNPTNETLSIIRLIKNAC 90
>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
Provisional.
Length = 1037
Score = 26.3 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 11/36 (30%)
Query: 30 VMVKAFLST------QEITDDVLHKYVRNNVEEPLS 59
++ AF+ST Q+I D YV +N+++PLS
Sbjct: 137 ILTIAFVSTDGSMDKQDIAD-----YVASNIQDPLS 167
>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 26.0 bits (58), Expect = 5.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 44 DVLHKY--VR--------NNVEEPLSFVRLMSFVCRDGDRIVGAIRA 80
DVL Y VR N+V ++ VR R GD + GA+RA
Sbjct: 301 DVLDNYAFVRTSGYLPGPNDVYVSMNQVRKNGL--RKGDAVTGAVRA 345
>gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional.
Length = 347
Score = 26.0 bits (57), Expect = 5.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 19 EQRVDQVAV-----DEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFV 61
EQ + +A+ +VM ++FLS E++ VL +Y R P++
Sbjct: 194 EQLMTLLALIFESDSKVMSQSFLSGTEVSCGVLERY-RGGKRNPIALP 240
>gnl|CDD|150001 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2, catalytic.
Members of this family adopt a secondary structure
consisting of two beta sheets and one alpha helix,
arranged as a beta-alpha-beta motif. Each beta sheet has
five strands, arranged in a 32145 order, with the second
strand being antiparallel to the rest. They are capable
of resolving Holliday junctions and cleave DNA after
5'-CT-3' and 5'-TT-3' sequences.
Length = 253
Score = 25.8 bits (57), Expect = 5.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 138 HLGFKKPHQHQI---RYAHGGGAAT-DWLVHIFKNNIMENMI 175
L KP I R+ GG +A +W + N++E+M+
Sbjct: 74 LLLPYKPTHVLIERQRFRSGGSSAVLEW---TLRVNMLESML 112
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 25.5 bits (56), Expect = 8.1
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 32 VKAFLST---QEITDDVLHKYVRNNVEEPLSFV---RLMSFVCR--DGDRIVGAIRATPI 83
++ FL Q ++ D++ Y+++ E P+SF R V R D I+ A+ +T +
Sbjct: 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTIL 274
Query: 84 QI 85
+
Sbjct: 275 SL 276
>gnl|CDD|162142 TIGR00975, 3a0107s03, phosphate ABC transporter, phosphate-binding
protein. This family represents one type of
(periplasmic, in Gram-negative bacteria)
phosphate-binding protein found in phosphate ABC
(ATP-binding cassette) transporters. This protein is
accompanied, generally in the same operon, by an ATP
binding protein and (usually) two permease proteins.
Length = 314
Score = 25.5 bits (56), Expect = 9.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 111 LAYMSFMAIKNSGAEFVLIDAK 132
+SF A+KNS +FVL DA+
Sbjct: 201 QNKLSFAALKNSAGKFVLPDAE 222
>gnl|CDD|150336 pfam09635, MetRS-N, MetRS-N binding domain. The MetRS-N domain
binds an Arc1-P domain in a tetrameric complex
resembling a classical GST homo-dimer. Domain-swapping
between symmetrically related MetRS-N and Arc1p-N
domains generates a 2:2 tetramer held together by van
der Waals forces. This domain is necessary for formation
of the aminoacyl-tRNA synthetase complex necessary for
tRNA nuclear export and shuttling as part of the
translational apparatus. The domain is associated with
pfam09334.
Length = 122
Score = 25.2 bits (55), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 40 EITDDVLHKYVRNNVEEPLSFVRLMSF 66
E+T+ L Y+ + +EPL+ RL+ F
Sbjct: 93 ELTNKSLENYL-VSKKEPLTATRLIVF 118
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,093,146
Number of extensions: 193971
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 24
Length of query: 185
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,092,969
Effective search space: 397017993
Effective search space used: 397017993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)