BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score =  387 bits (993), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF 60
           MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF
Sbjct: 1   MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF 60

Query: 61  VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK 120
           VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK
Sbjct: 61  VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK 120

Query: 121 NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL 180
           NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL
Sbjct: 121 NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL 180

Query: 181 RREYD 185
           RREYD
Sbjct: 181 RREYD 185


>gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 49

 Score = 80.9 bits (198), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 46/68 (67%), Gaps = 20/68 (29%)

Query: 117 MAIKNSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIG 176
           MAIKNSGAEFVLIDAK D +KHLGFKKP                    IFKNNIMENMIG
Sbjct: 1   MAIKNSGAEFVLIDAKSDGYKHLGFKKP--------------------IFKNNIMENMIG 40

Query: 177 KMSLRREY 184
           +MSLRREY
Sbjct: 41  RMSLRREY 48


>gi|254781162|ref|YP_003065575.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 192

 Score = 64.7 bits (156), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 64  MSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSG 123
           +SF+C +G RIVG++R TPI I K  G L GP+ V   Y+ +GIG +L  MS  A +  G
Sbjct: 74  LSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133

Query: 124 AEFVLIDAKHDWHKHLGFK 142
           ++ +++     ++  LGF+
Sbjct: 134 SQVIVLVGDIAYYSKLGFQ 152


>gi|254781155|ref|YP_003065568.1| hypothetical protein CLIBASIA_05310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 35

 Score = 52.4 bits (124), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 139 LGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIME 172
           +GFKKP+Q+QI +A GG   T WLVHIFK N+ME
Sbjct: 1   MGFKKPYQNQIEHAQGGRKTTAWLVHIFKKNLME 34


>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 271

 Score = 22.7 bits (47), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 1   MPKQPNVNIELEGLTFANEQRVDQVAV 27
           + K  N   +L+G++FA ++ +D V V
Sbjct: 128 ISKATNKEQDLQGISFAEKKSIDTVVV 154


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 21.9 bits (45), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 18  NEQRVDQVAVDEVM 31
           NE RVDQ+  DE++
Sbjct: 310 NEVRVDQLTKDEIL 323


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 21.9 bits (45), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 146 QHQIRYAHGGGAATDWL 162
            H+I   H G A  DW+
Sbjct: 37  SHKIGEVHDGSATMDWM 53


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1398

 Score = 21.9 bits (45), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 21   RVDQVAVD----EVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVG 76
            R++ VA++    EV+V+  L   EITD    +Y+  +  + +    L   + + G ++V 
Sbjct: 1237 RLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVS 1296

Query: 77   AIRATPIQIGKYKGFLR 93
                +PI  G  K  L+
Sbjct: 1297 ---FSPILQGITKASLQ 1310


>gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 230

 Score = 21.6 bits (44), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 125 EFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENM 174
           E+ +   + D  + L  ++ ++  +    GGG+    ++ I +NN+ E++
Sbjct: 100 EWFMYQMEQDVTRPLAHERVYKLHMTTEQGGGSPDSKVLRIARNNMREHI 149


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,687
Number of Sequences: 1233
Number of extensions: 4734
Number of successful extensions: 16
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)