BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780990|ref|YP_003065403.1| hypothetical protein
CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 66

 Score =  136 bits (342), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MFLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRHPINKYEKTDN 60
          MFLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRHPINKYEKTDN
Sbjct: 1  MFLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRHPINKYEKTDN 60

Query: 61 FFALYT 66
          FFALYT
Sbjct: 61 FFALYT 66


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 341

 Score = 25.8 bits (55), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 5  PDDGIDDLFEEDLFQYDANKSELVLISSLW 34
          PD  +++L  E  F+ D ++S L+L S  W
Sbjct: 40 PDGNMEELSPERDFKVDVDESSLILSSKRW 69


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 23.5 bits (49), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 10/33 (30%)

Query: 10  DDLFEEDLFQYDANKSELVLISSLWSIDFFEIN 42
           D L+E+  FQ           S L ++DF+EIN
Sbjct: 101 DRLYEKKFFQE----------SGLTTVDFYEIN 123


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.144    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,220
Number of Sequences: 1233
Number of extensions: 1343
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 328,796
effective HSP length: 37
effective length of query: 29
effective length of database: 283,175
effective search space:  8212075
effective search space used:  8212075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)