HHsearch alignment for GI: 254780991 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=97.99 E-value=0.0023 Score=43.75 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHCCC-----CEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 43899999999887397-----337998633764699999999971-----99789993163468999999998678983
Q gi|254780991|r 152 DQPAAIAQLLKGIHSRE-----KVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~-----~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~ 221 (805)
T Consensus 252 ~q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~ 331 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF 331 (962)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999712678777238984069837899999999998365999699996728899999999999887632
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHH----HCCC-CCHHH-HHCCE
Q ss_conf 89986213444421015554321022103588999999999999854-998499827789----6168-98347-72257
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSC----IYGI-GSVES-YSQMI 294 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSA----Ifgl-~~P~~-~lglI 294 (805)
T Consensus 332 ~~~-~-------------------------~-----~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 332 NDP-K-------------------------A-----ESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred CCC-C-------------------------C-----CCHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEE
T ss_conf 044-4-------------------------4-----57999999986589848999710264333333200047876799
Q ss_pred EEEECCCCC
Q ss_conf 999419811
Q gi|254780991|r 295 VQLKIGDSV 303 (805)
Q Consensus 295 IvdEehd~~ 303 (805)
T Consensus 381 I~DEaHRSQ 389 (962)
T COG0610 381 IIDEAHRSQ 389 (962)
T ss_pred EEECCCCCC
T ss_conf 986401035