HHsearch alignment for GI: 254780991 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=99.93 E-value=3.9e-23 Score=191.84 Aligned_cols=330 Identities=21% Similarity=0.263 Sum_probs=221.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 4775188888843899999999887397337-9986337646999999999---71997899931634689999999986
Q gi|254780991|r 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 141 f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
T Consensus 255 ~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 255 FLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99858997678999999999866448666678752676777899999999999872881688663799999999999987
Q ss_pred CCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCE
Q ss_conf 7898--38998621344442101555432102210358899999999999985499849982778961689834772257
Q gi|254780991|r 217 FPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294 (805)
Q Consensus 217 Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglI 294 (805)
T Consensus 335 l~~~~i~V~lLtG~~-------------------------kgk~r~~~l~~l~~G~~~ivVGTHALiQ-d~V~F~~LgLV 388 (677)
T COG1200 335 LEPLGIRVALLTGSL-------------------------KGKARKEILEQLASGEIDIVVGTHALIQ-DKVEFHNLGLV 388 (677)
T ss_pred HHHCCCEEEEEECCC-------------------------CHHHHHHHHHHHHCCCCCEEEECCHHHH-CCEEECCEEEE
T ss_conf 665197489864466-------------------------5067999999874799897997221220-45044202389
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHH-HHHCCCCCCCCHHHH
Q ss_conf 9994198111787532343117656338775453318724783178887788873104442002-221016664001110
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE-EISEFYPLTGQKIRN 373 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe-~I~~fDplT~~~~~~ 373 (805)
T Consensus 389 IiDEQHR-------------FGV~QR~~L~~KG~~-~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP--------- 443 (677)
T COG1200 389 IIDEQHR-------------FGVHQRLALREKGEQ-NPHVLVMTATPIPR--TLALTAFGDLDVSIIDELP--------- 443 (677)
T ss_pred EEECCCC-------------CCHHHHHHHHHHCCC-CCCEEEEECCCCHH--HHHHHHHCCCCCHHHCCCC---------
T ss_conf 9725210-------------229999999973789-99679995798507--8898886146301112579---------
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 00010000000025636788754558998998998875443321100124444777753321120145101133311446
Q gi|254780991|r 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453 (805)
Q Consensus 374 ~~~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~ 453 (805)
T Consensus 444 --~G-RkpI~T~~i~~~~~~~v~e~i~~ei~---------------------------~-----------GrQaY~VcP- 481 (677)
T COG1200 444 --PG-RKPITTVVIPHERRPEVYERIREEIA---------------------------K-----------GRQAYVVCP- 481 (677)
T ss_pred --CC-CCCEEEEEECCCCHHHHHHHHHHHHH---------------------------C-----------CCEEEEEEC-
T ss_conf --89-97408999644447999999999997---------------------------4-----------997999952-
Q ss_pred CCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 55562023302654421321012344754454324565413332357665544432221110100121555454446867
Q gi|254780991|r 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533 (805)
Q Consensus 454 ~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg 533 (805)
T Consensus 482 ------------------LIeeSE-------------------------~l----------------------------- 489 (677)
T COG1200 482 ------------------LIEESE-------------------------KL----------------------------- 489 (677)
T ss_pred ------------------CCCCCC-------------------------CC-----------------------------
T ss_conf ------------------535433-------------------------11-----------------------------
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 54201322002343201244677200001331016889999998630232124662147899999999863596687325
Q gi|254780991|r 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613 (805)
Q Consensus 534 ~~e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h 613 (805)
T Consensus 490 --------------------------~---------------------------l~~a~~~~~~L~~~~~--~~~vgL~H 514 (677)
T COG1200 490 --------------------------E---------------------------LQAAEELYEELKSFLP--ELKVGLVH 514 (677)
T ss_pred --------------------------H---------------------------HHHHHHHHHHHHHHCC--CCEEEEEE
T ss_conf --------------------------3---------------------------6549999999998705--46367775
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEECC
Q ss_conf 76457899999999731898699984587535787771179996288567444601377665431279-98669998248
Q gi|254780991|r 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADT 692 (805)
Q Consensus 614 ~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~-~~G~~il~ad~ 692 (805)
T Consensus 515 Grm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGL----aQLHQLRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 515 GRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGL----AQLHQLRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEECHHHHHH----HHHHHHCCCCCCCCCCEEEEEEECC
T ss_conf 689867799999999808876899813899523578870799965433037----8888752655788754489999679
Q ss_pred CC
Q ss_conf 98
Q gi|254780991|r 693 IT 694 (805)
Q Consensus 693 ~t 694 (805)
T Consensus 591 ~~ 592 (677)
T COG1200 591 PL 592 (677)
T ss_pred CC
T ss_conf 87