HHsearch alignment for GI: 254780991 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=97.35 E-value=0.00099 Score=46.47 Aligned_cols=85 Identities=28% Similarity=0.445 Sum_probs=72.2
Q ss_pred HHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCC
Q ss_conf 999863023212466214----7899999999863596687325764578999999997318986999845-87535787
Q gi|254780991|r 574 EINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDI 648 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~t----kr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~-~~akGlD~ 648 (805)
T Consensus 303 aml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F 382 (677)
T COG1200 303 AMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF 382 (677)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEE
T ss_conf 99999872881688663799999999999987665197489864466506799999987479989799722122045044
Q ss_pred CCCCEEEEEC
Q ss_conf 7711799962
Q gi|254780991|r 649 PECGLVAILD 658 (805)
Q Consensus 649 p~v~lV~i~d 658 (805)
T Consensus 383 ~~LgLVIiDE 392 (677)
T COG1200 383 HNLGLVIIDE 392 (677)
T ss_pred CCEEEEEEEC
T ss_conf 2023899725