HHsearch alignment for GI: 254780991 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.79 E-value=3.3e-17 Score=147.47 Aligned_cols=123 Identities=25% Similarity=0.292 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
Q ss_conf 01688999999863023212466214789999999986359-66873257645789999999973189869998458753
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~-i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~ak 644 (805)
T Consensus 237 ~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 237 ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 24678999999999616858999727278999999998726875565316665778999999986688629998064220
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEECCC
Q ss_conf 578777117999628856744460137766543127--9986699982489
Q gi|254780991|r 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTI 693 (805)
Q Consensus 645 GlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR--~~~G~~il~ad~~ 693 (805)
T Consensus 317 GIDiG~vdlVIq~~S-----P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 317 GIDIGDIDLVIQLGS-----PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred CCCCCCCEEEEEECC-----CHHHHHHHHHCCCCCCCCCCCCCEEEEECCH
T ss_conf 502477429998179-----3888888685031466568864279981679