HHsearch alignment for GI: 254780991 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.62 E-value=3.4e-13 Score=117.37 Aligned_cols=327 Identities=21% Similarity=0.179 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----H---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38999999998873973379986337646999999999----7---1997899931634689999999986789838998
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----A---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
T Consensus 200 ~~~~~~~~~~~~~~~~-~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~ 278 (733)
T COG1203 200 QEKALELILRLEKRSL-LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGK 278 (733)
T ss_pred HHHHHHHHHHCCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6799999873225575-189991688871999999999975311354562899655899999999999875123554331
Q ss_pred --EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHH-------HHCCEEE
Q ss_conf --6213444421015554321022103588999999999999854998499827789616898347-------7225799
Q gi|254780991|r 226 --VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-------YSQMIVQ 296 (805)
Q Consensus 226 --~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~-------~lglIIv 296 (805)
T Consensus 279 ~~h~~~~~~~----------~~~~~~---~~~~~~~~~ds~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIl 344 (733)
T COG1203 279 SLHSSSKEPL----------LLEPDQ---DILLTLTTNDSYK-KLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVIL 344 (733)
T ss_pred CCCCCCHHHH----------HHCCCC---CCCEEEEECCCCC-CCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEE
T ss_conf 0013102556----------517010---0225888124223-6204522206999855740466725778876467787
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCC
Q ss_conf 94198111787532343117656338775453318724783178887788873104442002221016664001110000
Q gi|254780991|r 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376 (805)
Q Consensus 297 dEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~ 376 (805)
T Consensus 345 DE~h~~-------~~~~--~~~~l~~~i~~l~~~g~~ill~SATlP~~~------------------------------- 384 (733)
T COG1203 345 DEVHLY-------ADET--MLAALLALLEALAEAGVPVLLMSATLPPFL------------------------------- 384 (733)
T ss_pred ECHHHC-------CCCC--HHHHHHHHHHHHHHCCCCEEEEECCCCHHH-------------------------------
T ss_conf 427541-------6543--089999999999968997899927899799-------------------------------
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 10000000025636788754558998998998875443321100124444777753321120145101133311446555
Q gi|254780991|r 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456 (805)
Q Consensus 377 ~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge 456 (805)
T Consensus 385 -----------------------~~~l~~~--------------------------~~~~~~~~--~~~~~---~~~--- 407 (733)
T COG1203 385 -----------------------KEKLKKA--------------------------LGKGREVV--ENAKF---CPK--- 407 (733)
T ss_pred -----------------------HHHHHHH--------------------------HCCCCEEC--CCCCC---CCC---
T ss_conf -----------------------9999998--------------------------50376121--34432---334---
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 62023302654421321012344754454324565413332357665544432221110100121555454446867542
Q gi|254780991|r 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536 (805)
Q Consensus 457 ~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e 536 (805)
T Consensus 408 ----------------~~e-----~~~--------~~-------------------------------~~~~-------- 419 (733)
T COG1203 408 ----------------EDE-----PGL--------KR-------------------------------KERV-------- 419 (733)
T ss_pred ----------------CCC-----CCC--------CE-------------------------------ECCH--------
T ss_conf ----------------554-----330--------00-------------------------------0011--------
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 01322002343201244677200001331016889999998630232124662147899999999863596687325764
Q gi|254780991|r 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616 (805)
Q Consensus 537 ~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~ 616 (805)
T Consensus 420 ----------------~~~~~~---------~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf 474 (733)
T COG1203 420 ----------------DVEDGP---------QEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRF 474 (733)
T ss_pred ----------------HHHCCC---------HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf ----------------132030---------3776655677642588289999278999999999855589579988635
Q ss_pred CHHHHHHHHHHHH----CCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-C--CCCEEEEE
Q ss_conf 5789999999973----189869998458753578777117999628856744460137766543127-9--98669998
Q gi|254780991|r 617 KTLERIEIIRDLR----LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-N--VNSKVILY 689 (805)
Q Consensus 617 ~~~~r~~il~~~~----~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~--~~G~~il~ 689 (805)
T Consensus 475 ~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m-ITe------~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 475 TLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL-ITE------LAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC-CCEE-EEC------CCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 5766999999998887537862999834599886266-6846-634------7875679998777741566668716998
Q ss_pred ECC
Q ss_conf 248
Q gi|254780991|r 690 ADT 692 (805)
Q Consensus 690 ad~ 692 (805)
T Consensus 547 ~~~ 549 (733)
T COG1203 547 NDE 549 (733)
T ss_pred ECC
T ss_conf 346