HHsearch alignment for GI: 254780991 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.87 E-value=1.1e-07 Score=76.16 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE--------ECCCC-----CCCCCCHHHH
Q ss_conf 5966873257645789999999973189869998458753578777117999--------62885-----6744460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--------LDADK-----EGFLRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i--------~dAD~-----~~f~~~~~~~ 671 (805)
T Consensus 286 ~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA 365 (845)
T COG1643 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASA 365 (845)
T ss_pred CCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHH
T ss_conf 88389404035998999866287888860499975140013115785899848825210035134852666787505323
Q ss_pred HHHHHHHCCCCCCEEE-EEE
Q ss_conf 7665431279986699-982
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYA 690 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~a 690 (805)
T Consensus 366 ~QRaGRAGR~~pGicyRLys 385 (845)
T COG1643 366 DQRAGRAGRTGPGICYRLYS 385 (845)
T ss_pred HHHCCCCCCCCCCEEEEECC
T ss_conf 34345545777852899447