HHsearch alignment for GI: 254780991 and conserved domain: COG2804
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.70 E-value=0.011 Score=38.57 Aligned_cols=94 Identities=29% Similarity=0.429 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 884389999999988739733799863376469999999997199789-9931634689999999986789838998621
Q gi|254780991|r 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228 (805)
Q Consensus 150 ~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aL-vLvPei~La~QL~~rfk~~Fp~n~V~~f~S~ 228 (805)
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti-----------------EDPVE~~~~g 302 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI-----------------EDPVEYQLPG 302 (500)
T ss_pred HCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-----------------ECCEEEECCC
T ss_conf 38998899999999728970899968999988999999999862788508984-----------------0780451598
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECC
Q ss_conf 3444421015554321022103588999999999999854-998499827
Q gi|254780991|r 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSS 277 (805)
Q Consensus 229 ~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgs 277 (805)
T Consensus 303 I~--Q---------------~qVN~k~gltfa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 303 IN--Q---------------VQVNPKIGLTFARALRAILRQDPDVIMVGE 335 (500)
T ss_pred CC--E---------------EECCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 51--5---------------631403599789999998665998599835