HHsearch alignment for GI: 254780991 and conserved domain: COG3604

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=94.30  E-value=0.18  Score=29.60  Aligned_cols=92  Identities=23%  Similarity=0.394  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHH---CCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEE----ECCHHHHHHHHHHHHHHCCCCE
Q ss_conf             3899999999887---397337998633764699999999971----9978999----3163468999999998678983
Q gi|254780991|r  153 QPAAIAQLLKGIH---SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVM----APNKILAAQLYSEFKNFFPHNA  221 (805)
Q Consensus       153 Q~~Ai~~L~~~l~---~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvL----vPei~La~QL~~rfk~~Fp~n~  221 (805)
T Consensus       228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGK-ElvAraIH~~S~R~~kPfV~~NCAAlPesLlES-------ELFGHeK  299 (550)
T COG3604         228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGK-ELVARAIHQLSPRRDKPFVKLNCAALPESLLES-------ELFGHEK  299 (550)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHH-------HHHCCCC
T ss_conf             69999999999998726898079845888538-999999987375557986663122253788888-------8745332


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCC
Q ss_conf             89986213444421015554321022103588999999999999854998499827789616898347722579994198
Q gi|254780991|r  222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD  301 (805)
Q Consensus       222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd  301 (805)
T Consensus       300 GAF-------------------------------------------T----GA~~~r~GrF----ElAdGGTLFLDEIGe  328 (550)
T COG3604         300 GAF-------------------------------------------T----GAINTRRGRF----ELADGGTLFLDEIGE  328 (550)
T ss_pred             CCC-------------------------------------------C----CCHHCCCCCE----EECCCCEEECHHHCC
T ss_conf             233-------------------------------------------3----5101467635----655797576022036


Q ss_pred             CC
Q ss_conf             11
Q gi|254780991|r  302 SV  303 (805)
Q Consensus       302 ~~  303 (805)
T Consensus       329 lP  330 (550)
T COG3604         329 LP  330 (550)
T ss_pred             CC
T ss_conf             78