HHsearch alignment for GI: 254780991 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=94.30 E-value=0.18 Score=29.60 Aligned_cols=92 Identities=23% Similarity=0.394 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHH---CCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEE----ECCHHHHHHHHHHHHHHCCCCE
Q ss_conf 3899999999887---397337998633764699999999971----9978999----3163468999999998678983
Q gi|254780991|r 153 QPAAIAQLLKGIH---SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVM----APNKILAAQLYSEFKNFFPHNA 221 (805)
Q Consensus 153 Q~~Ai~~L~~~l~---~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvL----vPei~La~QL~~rfk~~Fp~n~ 221 (805)
T Consensus 228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGK-ElvAraIH~~S~R~~kPfV~~NCAAlPesLlES-------ELFGHeK 299 (550)
T COG3604 228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGK-ELVARAIHQLSPRRDKPFVKLNCAALPESLLES-------ELFGHEK 299 (550)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHH-------HHHCCCC
T ss_conf 69999999999998726898079845888538-999999987375557986663122253788888-------8745332
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCC
Q ss_conf 89986213444421015554321022103588999999999999854998499827789616898347722579994198
Q gi|254780991|r 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301 (805)
Q Consensus 222 V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd 301 (805)
T Consensus 300 GAF-------------------------------------------T----GA~~~r~GrF----ElAdGGTLFLDEIGe 328 (550)
T COG3604 300 GAF-------------------------------------------T----GAINTRRGRF----ELADGGTLFLDEIGE 328 (550)
T ss_pred CCC-------------------------------------------C----CCHHCCCCCE----EECCCCEEECHHHCC
T ss_conf 233-------------------------------------------3----5101467635----655797576022036
Q ss_pred CC
Q ss_conf 11
Q gi|254780991|r 302 SV 303 (805)
Q Consensus 302 ~~ 303 (805)
T Consensus 329 lP 330 (550)
T COG3604 329 LP 330 (550)
T ss_pred CC
T ss_conf 78