HHsearch alignment for GI: 254780991 and conserved domain: COG3972
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=95.25 E-value=0.018 Score=36.95 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=62.2
Q ss_pred CHHHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC--CCCC
Q ss_conf 214789-9999999863596687325764578999999997318986999845875357877711799962885--6744
Q gi|254780991|r 589 VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK--EGFL 665 (805)
Q Consensus 589 ~~tkr~-~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~--~~f~ 665 (805)
T Consensus 484 p~t~Rgy~~~li~SL~s~giq~hl~gvd~s~e~------~f~~dg-kvtis~IyrAKGnEap---fVy~lga~~~s~gLa 553 (660)
T COG3972 484 PGTMRGYIYELIHSLKSKGIQQHLWGVDISHET------KFKQDG-KVTISRIYRAKGNEAP---FVYALGAAYLSTGLA 553 (660)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCC-EEEEEEEECCCCCCCC---EEEEEHHHHCCHHHH
T ss_conf 742100699999999873454404666765566------411366-3899863315677575---899961344274567
Q ss_pred CCHHH-HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 46013-776654312799866999824898899999998788888
Q gi|254780991|r 666 RSKTS-LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709 (805)
Q Consensus 666 ~~~~~-~~q~~GRagR~~~G~~il~ad~~t~~~~~ai~e~~rrr~ 709 (805)
T Consensus 554 -~~RN~LFTamTRS--kawvrV~g----~gpsm~~li~efn~l~q 591 (660)
T COG3972 554 -DWRNILFTAMTRS--KAWVRVVG----LGPQMQRLITEFNILRQ 591 (660)
T ss_pred -HHHHHHHHHHHHH--HHHHEEEC----CCCHHHHHHHHHHHHHH
T ss_conf -7776899999874--35413421----48017899999989875