HHsearch alignment for GI: 254780991 and conserved domain: COG4096

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.57  E-value=6.9e-13  Score=115.07  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=96.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             888843899999999887397337998633764699999999971-----997899931634689999999986789838
Q gi|254780991|r  148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAV  222 (805)
Q Consensus       148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V  222 (805)
T Consensus       165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~  244 (875)
T COG4096         165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK  244 (875)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCCCC
T ss_conf             62278899999999998668744899970588852319999999996141430567612678999999999963988640


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC-------CHH--HHHCC
Q ss_conf             998621344442101555432102210358899999999999985499849982778961689-------834--77225
Q gi|254780991|r  223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-------SVE--SYSQM  293 (805)
Q Consensus       223 ~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~-------~P~--~~lgl  293 (805)
T Consensus       245 ~n~i~~~~~~------------------------------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl  288 (875)
T COG4096         245 MNKIEDKKGD------------------------------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL  288 (875)
T ss_pred             EEEECCCCCC------------------------------------CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf             1232014678------------------------------------6305887603778756406545655678883128


Q ss_pred             EEEEECCCCCCHHHH
Q ss_conf             799941981117875
Q gi|254780991|r  294 IVQLKIGDSVEQKEL  308 (805)
Q Consensus       294 IIvdEehd~~~~~~~  308 (805)
T Consensus       289 IvIDEaHRgi~~~~~  303 (875)
T COG4096         289 IVIDEAHRGIYSEWS  303 (875)
T ss_pred             EEECHHHHHHHHHHH
T ss_conf             996066666787667