HHsearch alignment for GI: 254780991 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.57 E-value=6.9e-13 Score=115.07 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 888843899999999887397337998633764699999999971-----997899931634689999999986789838
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V 222 (805)
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCCCC
T ss_conf 62278899999999998668744899970588852319999999996141430567612678999999999963988640
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC-------CHH--HHHCC
Q ss_conf 998621344442101555432102210358899999999999985499849982778961689-------834--77225
Q gi|254780991|r 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-------SVE--SYSQM 293 (805)
Q Consensus 223 ~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~-------~P~--~~lgl 293 (805)
T Consensus 245 ~n~i~~~~~~------------------------------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 245 MNKIEDKKGD------------------------------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred EEEECCCCCC------------------------------------CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 1232014678------------------------------------6305887603778756406545655678883128
Q ss_pred EEEEECCCCCCHHHH
Q ss_conf 799941981117875
Q gi|254780991|r 294 IVQLKIGDSVEQKEL 308 (805)
Q Consensus 294 IIvdEehd~~~~~~~ 308 (805)
T Consensus 289 IvIDEaHRgi~~~~~ 303 (875)
T COG4096 289 IVIDEAHRGIYSEWS 303 (875)
T ss_pred EEECHHHHHHHHHHH
T ss_conf 996066666787667