HHsearch alignment for GI: 254780991 and conserved domain: COG4098

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.90  E-value=3e-20  Score=170.19  Aligned_cols=324  Identities=20%  Similarity=0.275  Sum_probs=217.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8884389999999988739733799863376469999999997---1997899931634689999999986789838998
Q gi|254780991|r  149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF  225 (805)
Q Consensus       149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f  225 (805)
T Consensus        98 Ls~~Q~~as~~l~q~i~~k-~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L  176 (441)
T COG4098          98 LSPGQKKASNQLVQYIKQK-EDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL  176 (441)
T ss_pred             CCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             2724789999999998715-768999742798510169999999965986998468610117778999976214986667


Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCH
Q ss_conf             62134444210155543210221035889999999999998549984998277896168983477225799941981117
Q gi|254780991|r  226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ  305 (805)
Q Consensus       226 ~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~  305 (805)
T Consensus       177 yg~S~~~------------------------------------fr~plvVaTtHQLl---rFk~aFD~liIDEVDAFP--  215 (441)
T COG4098         177 YGDSDSY------------------------------------FRAPLVVATTHQLL---RFKQAFDLLIIDEVDAFP--  215 (441)
T ss_pred             ECCCCHH------------------------------------CCCCEEEEEHHHHH---HHHHHCCEEEEECCCCCC--
T ss_conf             2587131------------------------------------33447997668888---888643389983024565--


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHC
Q ss_conf             87532343117656338775453318724783178887788873104442002221016664001110000100000000
Q gi|254780991|r  306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY  385 (805)
Q Consensus       306 ~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~  385 (805)
T Consensus       216 ---~~~d~~L~~-----Av~~ark~~g~~IylTATp~k~l~--r~-----------------------------------  250 (441)
T COG4098         216 ---FSDDQSLQY-----AVKKARKKEGATIYLTATPTKKLE--RK-----------------------------------  250 (441)
T ss_pred             ---CCCCHHHHH-----HHHHHHCCCCCEEEEECCCHHHHH--HH-----------------------------------
T ss_conf             ---667888999-----999751236736999648807888--87-----------------------------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCC
Q ss_conf             25636788754558998998998875443321100124444777753321120145101133311446555620233026
Q gi|254780991|r  386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI  465 (805)
Q Consensus       386 v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~  465 (805)
T Consensus       251 ------------------------~~-~g~---~-------------------------~~~kl---------p~RfH~~  268 (441)
T COG4098         251 ------------------------IL-KGN---L-------------------------RILKL---------PARFHGK  268 (441)
T ss_pred             ------------------------HH-HCC---E-------------------------EEEEC---------CHHHCCC
T ss_conf             ------------------------54-077---5-------------------------67634---------4654389


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             54421321012344754454324565413332357665544432221110100121555454446867542013220023
Q gi|254780991|r  466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV  545 (805)
Q Consensus       466 p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~  545 (805)
T Consensus       269 -------------pLpvPkf~w~~~~~k~l~-----------r~kl~---------------------------------  291 (441)
T COG4098         269 -------------PLPVPKFVWIGNWNKKLQ-----------RNKLP---------------------------------  291 (441)
T ss_pred             -------------CCCCCCEEEECCHHHHHH-----------HCCCC---------------------------------
T ss_conf             -------------989874288644777766-----------44477---------------------------------


Q ss_pred             HHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHCCCEE-EECCCCCCHHHHHH
Q ss_conf             432012446772000013310168899999986302321246621478999999998-6359668-73257645789999
Q gi|254780991|r  546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL-YERNIRV-RYMHSEVKTLERIE  623 (805)
Q Consensus       546 eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~-~~~~i~~-~~~h~~~~~~~r~~  623 (805)
T Consensus       292 -----------------------~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~E  346 (441)
T COG4098         292 -----------------------LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKE  346 (441)
T ss_pred             -----------------------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHH
T ss_conf             -----------------------8999999998743882899925058899999999861886421565336--701789


Q ss_pred             HHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---CCEEEEEECCCCHHHHHH
Q ss_conf             99997318986999845875357877711799962885674446013776654312799---866999824898899999
Q gi|254780991|r  624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLA  700 (805)
Q Consensus       624 il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~---~G~~il~ad~~t~~~~~a  700 (805)
T Consensus       347 kV~~fR~G~~~lLiTTTILERGVTfp~vd-V~Vlgaeh~vf--TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A  423 (441)
T COG4098         347 KVEAFRDGKITLLITTTILERGVTFPNVD-VFVLGAEHRVF--TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQA  423 (441)
T ss_pred             HHHHHHCCCEEEEEEEEHHHCCCCCCCCE-EEEECCCCCCC--CHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf             99998758638999844033266435623-99954776420--1889999752316787689875899964633899999


Q ss_pred             HHHHHH
Q ss_conf             998788
Q gi|254780991|r  701 IDETTR  706 (805)
Q Consensus       701 i~e~~r  706 (805)
T Consensus       424 ~keIk~  429 (441)
T COG4098         424 RKEIKE  429 (441)
T ss_pred             HHHHHH
T ss_conf             999999