HHsearch alignment for GI: 254780991 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=99.07 E-value=3.4e-07 Score=72.44 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=71.6
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE--ECCCCCCCCC-CHHHHHHHHHHHCC
Q ss_conf 35966873257645789999999973189869998458753578777117999--6288567444-60137766543127
Q gi|254780991|r 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFLR-SKTSLIQTIGRAAR 680 (805)
Q Consensus 604 ~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i--~dAD~~~f~~-~~~~~~q~~GRagR 680 (805)
T Consensus 444 ~RGia--vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGR 521 (1041)
T COG4581 444 LRGIA--VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGR 521 (1041)
T ss_pred HHHHH--HHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCEEEEEEEEECCCCEEECCHHHHHHHHHHHCC
T ss_conf 60345--4024503689999999986043057753334640157840013546557754885356581577775444301
Q ss_pred -CCC--CEEEEEEC-CCC-HHHHHHH
Q ss_conf -998--66999824-898-8999999
Q gi|254780991|r 681 -NVN--SKVILYAD-TIT-KSIQLAI 701 (805)
Q Consensus 681 -~~~--G~~il~ad-~~t-~~~~~ai 701 (805)
T Consensus 522 RGlD~~G~vI~~~~~~~~~~~e~~~l 547 (1041)
T COG4581 522 RGLDVLGTVIVIEPPFESEPSEAAGL 547 (1041)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 55654654999557887872777776