HHsearch alignment for GI: 254780991 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=90.18 E-value=1.1 Score=23.54 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 3899999999887397337998633764699999999971--99789993163468999999998678983899862134
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~ 230 (805)
T Consensus 115 LPevlk~la~---~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIED-----------------PIEfih~h-- 172 (375)
T COG5008 115 LPEVLKDLAL---AKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIED-----------------PIEFIHKH-- 172 (375)
T ss_pred CCHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEECC-----------------HHHHHHCC--
T ss_conf 8488997520---4374599987788884016899860134688773588238-----------------19987415--
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 4442101555432102210358899999999999985499849982778
Q gi|254780991|r 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279 (805)
Q Consensus 231 ~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrS 279 (805)
T Consensus 173 ---------~~CIvTQRE--vGvDTesw~~AlkNtlRQaPDvI~IGEvR 210 (375)
T COG5008 173 ---------KRCIVTQRE--VGVDTESWEVALKNTLRQAPDVILIGEVR 210 (375)
T ss_pred ---------CCEEEEEEE--ECCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf ---------641587334--14461889999998775189869997304