HHsearch alignment for GI: 254780991 and conserved domain: KOG0346
>KOG0346 consensus.
Probab=99.88 E-value=2.9e-20 Score=170.35 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=103.3
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHH-------------
Q ss_conf 9998630232124662147899999999863596687325764578999999997318986999845-------------
Q gi|254780991|r 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN------------- 640 (805)
Q Consensus 574 ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~------------- 640 (805)
T Consensus 260 allKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346 260 ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred HHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC
T ss_conf 99999886275499985002468899999980737665256466432122898860761159997067641355521112
Q ss_pred ----------------------HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCC
Q ss_conf ----------------------8753578777117999628856744460137766543127-99866999824898
Q gi|254780991|r 641 ----------------------LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTIT 694 (805)
Q Consensus 641 ----------------------~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t 694 (805)
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD-----~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD-----FPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHCHHCCCCCHHEEEEEECC-----CCCCHHHHHHHCCCCCCCCCCCCEEEEECCHH
T ss_conf 5444568877421244457011212165401211456137-----89854788886122234789872599966467