HHsearch alignment for GI: 254780991 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=92.67 E-value=0.78 Score=24.77 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=74.6
Q ss_pred CCEEEEEEECCCCHHHHHHHHH---HHC--CCCEEEEECCHHH-------HHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 7337998633764699999999---971--9978999316346-------899999999867898389986213444421
Q gi|254780991|r 168 EKVQLLLGVTGSGKTFTMAKVI---EAM--QRPAIVMAPNKIL-------AAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 168 ~~~qlL~GVTGSGKTevya~lI---~~~--gr~aLvLvPei~L-------a~QL~~rfk~~Fp~n~V~~f~S~~~~yqpE 235 (805)
T Consensus 145 yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~~~~~~Fr~~yr~~DvLli----DDiq-- 218 (447)
T PRK00149 145 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRNNAMEEFKEKYRSVDVLLI----DDIQ-- 218 (447)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEE----CHHH--
T ss_conf 7855897799887889999999999985899728995499999999999851869999999972885432----1488--
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 01555432102210358899999999999985499849982778961689834772257999419811178753234311
Q gi|254780991|r 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315 (805)
Q Consensus 236 ay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~ 315 (805)
T Consensus 219 --------f----l~gk~~tqeeff~~fn~l~~~~kqiv~tsd~------~P~~l~~l------~~-------------- 260 (447)
T PRK00149 219 --------F----LAGKEKTQEEFFHTFNALHENNKQIVITSDR------PPKELEGL------ED-------------- 260 (447)
T ss_pred --------H----HHCCHHHHHHHHHHHHHHHHCCCEEEEECCC------CHHHCCCC------CH--------------
T ss_conf --------8----6055779999999999999849968995788------96765651------17--------------
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 7656338775453318724783178887788
Q gi|254780991|r 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346 (805)
Q Consensus 316 ~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~ 346 (805)
T Consensus 261 ------r--L~SRf-~~Gl~~~i~~Pd~e~r 282 (447)
T PRK00149 261 ------R--LRSRF-EWGLTVDIEPPDLETR 282 (447)
T ss_pred ------H--HHHHH-HCCEEEECCCCCHHHH
T ss_conf ------7--88676-3762651059999999