HHsearch alignment for GI: 254780991 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=4.9e-30 Score=243.53 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=110.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
T Consensus 332 ~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~VInyD--- 408 (472)
T PRK01297 332 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT--- 408 (472)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf 87368961749999999987654496168643778999999999999769996998866133667757888899968---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-9986699982489889999999878888888
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQ 711 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q 711 (805)
T Consensus 409 --~P~~~~~YIHRiGRTGRaG~~G~aisfv---~~~d~~~~~~ie~~l~~~ 454 (472)
T PRK01297 409 --LPEDPDDYVHRIGRTGRAGASGVSISFA---GEDDAFQLPEIEELLGRK 454 (472)
T ss_pred --CCCCHHHHHHCCCHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHHCCC
T ss_conf --9897676010265312689963799986---388999999999998897