HHsearch alignment for GI: 254780991 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00  E-value=4.9e-30  Score=243.53  Aligned_cols=122  Identities=20%  Similarity=0.298  Sum_probs=110.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf             32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r  582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK  661 (805)
Q Consensus       582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~  661 (805)
T Consensus       332 ~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~VInyD---  408 (472)
T PRK01297        332 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT---  408 (472)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf             87368961749999999987654496168643778999999999999769996998866133667757888899968---


Q ss_pred             CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6744460137766543127-9986699982489889999999878888888
Q gi|254780991|r  662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQ  711 (805)
Q Consensus       662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q  711 (805)
T Consensus       409 --~P~~~~~YIHRiGRTGRaG~~G~aisfv---~~~d~~~~~~ie~~l~~~  454 (472)
T PRK01297        409 --LPEDPDDYVHRIGRTGRAGASGVSISFA---GEDDAFQLPEIEELLGRK  454 (472)
T ss_pred             --CCCCHHHHHHCCCHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHHCCC
T ss_conf             --9897676010265312689963799986---388999999999998897