HHsearch alignment for GI: 254780991 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=1.6e-30 Score=247.24 Aligned_cols=124 Identities=21% Similarity=0.362 Sum_probs=114.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
T Consensus 256 ~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~VINYD-- 333 (574)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYD-- 333 (574)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC--
T ss_conf 776511533418999999999997799689970999999999999999769997997735002335714699799957--
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL 712 (805)
Q Consensus 661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~ 712 (805)
T Consensus 334 ---lP~~~e~YVHRIGRTGRaGr~G~AITf---v~~~e~~~l~~IE~~i~~~i 380 (574)
T PRK04537 334 ---LPFDAEDYVHRIGRTARLGEEGDAISF---ACERYAMSLPDIEAYIEQKI 380 (574)
T ss_pred ---CCCCHHHHHCCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf ---969821411245350378993359998---77799899999999867878