HHsearch alignment for GI: 254780991 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00  E-value=0  Score=621.48  Aligned_cols=525  Identities=18%  Similarity=0.146  Sum_probs=369.9

Q ss_pred             HHHHHHHHHHHCC--------CHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHCCHHHH
Q ss_conf             6413456664233--------13688888740221000367777510102323432100036753210002320124556
Q gi|254780991|r   12 DSRIQSISTRVDD--------LDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSS   83 (805)
Q Consensus        12 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (805)
T Consensus        58 ~~~lK~I~~vld~~p~l~~~~l~l~~wia~yY~~~~g~vl~~~lP~~~~~------------------~~----kq~~~l  115 (699)
T PRK05580         58 LGKLKPIEEVLDPEPVLTPELLRLADWVADYYLGPLGDVLRLALPPRLRR------------------AP----KQQRLL  115 (699)
T ss_pred             HHCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC------------------CH----HHHHHH
T ss_conf             32067766524999888999999999999857877999999968986324------------------77----799999


Q ss_pred             HHHH-HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             5422-677432111475589999999987396032057402666788874215887754775188888843899999999
Q gi|254780991|r   84 ISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK  162 (805)
Q Consensus        84 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~  162 (805)
T Consensus       116 ~~l~~~~~~~~~~~~~~s~~~--l~~l~~~g~~~~~~~~~~----~-~~~~~~~------~~~~~~L~~eQ~~a~~~i~~  182 (699)
T PRK05580        116 AALGGAWTAALLEKAGVSASV--LKGLAKKGLIEIVERPPL----R-LRDPPDP------DTEPPTLNEEQAAALAAIRA  182 (699)
T ss_pred             HHHCCCCHHHHHHHCCCCHHH--HHHHHHCCCEEEEEECCC----C-CCCCCCC------CCCCCCCCHHHHHHHHHHHH
T ss_conf             863232426788762898899--999997897167532145----6-5433444------56787889999999999985


Q ss_pred             HHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             887397337998633764699999999971---99789993163468999999998678983899862134444210155
Q gi|254780991|r  163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP  239 (805)
Q Consensus       163 ~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p  239 (805)
T Consensus       183 ~--~~~~~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~-~v~v~HS~ls---------  250 (699)
T PRK05580        183 A--GGFSAFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGA-RVAVLHSGLS---------  250 (699)
T ss_pred             C--CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCC-CEEEECCCCC---------
T ss_conf             5--888717874789860799999999999973997899917678789999999987099-5799648898---------


Q ss_pred             CCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             54321022103588999999999999854998499827789616898347722579994198111787532343117656
Q gi|254780991|r  240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR  319 (805)
Q Consensus       240 ~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R  319 (805)
T Consensus       251 ----------------~~eR~~~w~~i~~G~~~IVIGtRSAvF---aP~~nLgLIIVDEEhd~S-----YKq~~~Pry~A  306 (699)
T PRK05580        251 ----------------DGERYRAWLAALRGEARVVIGTRSALF---APFKNLGLIIVDEEHDDS-----YKQQDGPRYHA  306 (699)
T ss_pred             ----------------HHHHHHHHHHHHCCCCEEEEECCCEEE---CCCCCCCEEEEECCCCHH-----HCCCCCCCCCH
T ss_conf             ----------------579999999997699719997360110---657898489997365454-----44666876119


Q ss_pred             CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             33877545331872478317888778887310444200222101666400111000010000000025636788754558
Q gi|254780991|r  320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI  399 (805)
Q Consensus       320 ~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i  399 (805)
T Consensus       307 RdvA~~Ra~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~------------~~P~v~ivDm~~~~~~~~~~l  374 (699)
T PRK05580        307 RDVAVLRAKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAA------------ALPRVEIIDMREEPLERGAGL  374 (699)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCC------------CCCEEEECCCCCCCCCCCCCC
T ss_conf             99999999984998896168999999999975997664465322347------------898379335421410025754


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf             99899899887544332110012444477775332112014510113331144655562023302654421321012344
Q gi|254780991|r  400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT  479 (805)
Q Consensus       400 ~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~  479 (805)
T Consensus       375 s~~l~~~i-~~~L~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~--l~Ch~Cg---------~~~~  442 (699)
T PRK05580        375 SPPLLEAI-REALERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRR--LRCHHCG---------YQEP  442 (699)
T ss_pred             CHHHHHHH-HHHHHCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCC--EECCCCC---------CCCC
T ss_conf             69999999-9999738847999547752251474531994565678986342068983--3226468---------8365


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             75445432456541333235766554443222111010012155545444686754201322002343201244677200
Q gi|254780991|r  480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV  559 (805)
Q Consensus       480 ~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~i  559 (805)
T Consensus       443 ~--------------------~~~Cp~Cgs~-------------------------------------------------  453 (699)
T PRK05580        443 I--------------------PRACPECGST-------------------------------------------------  453 (699)
T ss_pred             C--------------------CCCCCCCCCC-------------------------------------------------
T ss_conf             7--------------------5546567997-------------------------------------------------


Q ss_pred             EECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH
Q ss_conf             00133101688999999863023212466214789999999986359668732576457899999999731898699984
Q gi|254780991|r  560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI  639 (805)
Q Consensus       560 eir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt  639 (805)
T Consensus       454 -----------------------~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGT  510 (699)
T PRK05580        454 -----------------------DLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGT  510 (699)
T ss_pred             -----------------------CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECC
T ss_conf             -----------------------524111685999999997789998899847556786316889999746898789777


Q ss_pred             HHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCCC-CCCEEEEEECCCCHHHHHHHHHHHH--HHH
Q ss_conf             587535787771179996288----5674446013---77665431279-9866999824898899999998788--888
Q gi|254780991|r  640 NLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTR--RRE  709 (805)
Q Consensus       640 ~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR~-~~G~~il~ad~~t~~~~~ai~e~~r--rr~  709 (805)
T Consensus       511 qmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l~~~d~~~f~~  590 (699)
T PRK05580        511 QMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQALLRWDYDAFAE  590 (699)
T ss_pred             CCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHH
T ss_conf             33455677776269987322653548883479999999999987655678898799993799989999999689999999


Q ss_pred             HHHHHHHHHCCCCH
Q ss_conf             88876887188530
Q gi|254780991|r  710 KQLEHNKKHNINPQ  723 (805)
Q Consensus       710 ~q~~~n~~~~i~p~  723 (805)
T Consensus       591 ~el~~R~~~~~PPf  604 (699)
T PRK05580        591 AELAERREAGLPPF  604 (699)
T ss_pred             HHHHHHHHCCCCCH
T ss_conf             99999997099986