HHsearch alignment for GI: 254780991 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00 E-value=0 Score=621.48 Aligned_cols=525 Identities=18% Similarity=0.146 Sum_probs=369.9
Q ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHCCHHHH
Q ss_conf 6413456664233--------13688888740221000367777510102323432100036753210002320124556
Q gi|254780991|r 12 DSRIQSISTRVDD--------LDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSS 83 (805)
Q Consensus 12 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (805)
T Consensus 58 ~~~lK~I~~vld~~p~l~~~~l~l~~wia~yY~~~~g~vl~~~lP~~~~~------------------~~----kq~~~l 115 (699)
T PRK05580 58 LGKLKPIEEVLDPEPVLTPELLRLADWVADYYLGPLGDVLRLALPPRLRR------------------AP----KQQRLL 115 (699)
T ss_pred HHCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC------------------CH----HHHHHH
T ss_conf 32067766524999888999999999999857877999999968986324------------------77----799999
Q ss_pred HHHH-HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 5422-677432111475589999999987396032057402666788874215887754775188888843899999999
Q gi|254780991|r 84 ISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162 (805)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~P~gdQ~~Ai~~L~~ 162 (805)
T Consensus 116 ~~l~~~~~~~~~~~~~~s~~~--l~~l~~~g~~~~~~~~~~----~-~~~~~~~------~~~~~~L~~eQ~~a~~~i~~ 182 (699)
T PRK05580 116 AALGGAWTAALLEKAGVSASV--LKGLAKKGLIEIVERPPL----R-LRDPPDP------DTEPPTLNEEQAAALAAIRA 182 (699)
T ss_pred HHHCCCCHHHHHHHCCCCHHH--HHHHHHCCCEEEEEECCC----C-CCCCCCC------CCCCCCCCHHHHHHHHHHHH
T ss_conf 863232426788762898899--999997897167532145----6-5433444------56787889999999999985
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 887397337998633764699999999971---99789993163468999999998678983899862134444210155
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p 239 (805)
T Consensus 183 ~--~~~~~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~-~v~v~HS~ls--------- 250 (699)
T PRK05580 183 A--GGFSAFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGA-RVAVLHSGLS--------- 250 (699)
T ss_pred C--CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCC-CEEEECCCCC---------
T ss_conf 5--888717874789860799999999999973997899917678789999999987099-5799648898---------
Q ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 54321022103588999999999999854998499827789616898347722579994198111787532343117656
Q gi|254780991|r 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 240 ~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
T Consensus 251 ----------------~~eR~~~w~~i~~G~~~IVIGtRSAvF---aP~~nLgLIIVDEEhd~S-----YKq~~~Pry~A 306 (699)
T PRK05580 251 ----------------DGERYRAWLAALRGEARVVIGTRSALF---APFKNLGLIIVDEEHDDS-----YKQQDGPRYHA 306 (699)
T ss_pred ----------------HHHHHHHHHHHHCCCCEEEEECCCEEE---CCCCCCCEEEEECCCCHH-----HCCCCCCCCCH
T ss_conf ----------------579999999997699719997360110---657898489997365454-----44666876119
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 33877545331872478317888778887310444200222101666400111000010000000025636788754558
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i 399 (805)
T Consensus 307 RdvA~~Ra~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~------------~~P~v~ivDm~~~~~~~~~~l 374 (699)
T PRK05580 307 RDVAVLRAKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAA------------ALPRVEIIDMREEPLERGAGL 374 (699)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCC------------CCCEEEECCCCCCCCCCCCCC
T ss_conf 99999999984998896168999999999975997664465322347------------898379335421410025754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99899899887544332110012444477775332112014510113331144655562023302654421321012344
Q gi|254780991|r 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479 (805)
Q Consensus 400 ~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~ 479 (805)
T Consensus 375 s~~l~~~i-~~~L~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~--l~Ch~Cg---------~~~~ 442 (699)
T PRK05580 375 SPPLLEAI-REALERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRR--LRCHHCG---------YQEP 442 (699)
T ss_pred CHHHHHHH-HHHHHCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCC--EECCCCC---------CCCC
T ss_conf 69999999-9999738847999547752251474531994565678986342068983--3226468---------8365
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 75445432456541333235766554443222111010012155545444686754201322002343201244677200
Q gi|254780991|r 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 (805)
Q Consensus 480 ~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~i 559 (805)
T Consensus 443 ~--------------------~~~Cp~Cgs~------------------------------------------------- 453 (699)
T PRK05580 443 I--------------------PRACPECGST------------------------------------------------- 453 (699)
T ss_pred C--------------------CCCCCCCCCC-------------------------------------------------
T ss_conf 7--------------------5546567997-------------------------------------------------
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH
Q ss_conf 00133101688999999863023212466214789999999986359668732576457899999999731898699984
Q gi|254780991|r 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 (805)
Q Consensus 560 eir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt 639 (805)
T Consensus 454 -----------------------~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGT 510 (699)
T PRK05580 454 -----------------------DLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGT 510 (699)
T ss_pred -----------------------CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECC
T ss_conf -----------------------524111685999999997789998899847556786316889999746898789777
Q ss_pred HHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCCC-CCCEEEEEECCCCHHHHHHHHHHHH--HHH
Q ss_conf 587535787771179996288----5674446013---77665431279-9866999824898899999998788--888
Q gi|254780991|r 640 NLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTR--RRE 709 (805)
Q Consensus 640 ~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR~-~~G~~il~ad~~t~~~~~ai~e~~r--rr~ 709 (805)
T Consensus 511 qmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l~~~d~~~f~~ 590 (699)
T PRK05580 511 QMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQALLRWDYDAFAE 590 (699)
T ss_pred CCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHH
T ss_conf 33455677776269987322653548883479999999999987655678898799993799989999999689999999
Q ss_pred HHHHHHHHHCCCCH
Q ss_conf 88876887188530
Q gi|254780991|r 710 KQLEHNKKHNINPQ 723 (805)
Q Consensus 710 ~q~~~n~~~~i~p~ 723 (805)
T Consensus 591 ~el~~R~~~~~PPf 604 (699)
T PRK05580 591 AELAERREAGLPPF 604 (699)
T ss_pred HHHHHHHHCCCCCH
T ss_conf 99999997099986