HHsearch alignment for GI: 254780991 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.80  E-value=0.00072  Score=47.50  Aligned_cols=77  Identities=16%  Similarity=0.026  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11001244447777533211201451011333114465556202330265442132101234475445432456541333
Q gi|254780991|r  417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT  496 (805)
Q Consensus       417 ~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~  496 (805)
T Consensus       373 ~ls~~l~~~i~~~L~~g~qvll~lnRrGya~~~~C~~C------------------------------------------  410 (699)
T PRK05580        373 GLSPPLLEAIREALERGEQVLLFLNRRGYAPFLLCRDC------------------------------------------  410 (699)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHC------------------------------------------
T ss_conf             54699999999999738847999547752251474531------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf             2357665544432221110100121555454446867542013
Q gi|254780991|r  497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ  539 (805)
Q Consensus       497 l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~  539 (805)
T Consensus       411 ----g~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~  449 (699)
T PRK05580        411 ----GWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPE  449 (699)
T ss_pred             ----CCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             ----994565678986342068983322646883657554656