HHsearch alignment for GI: 254780991 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.42 E-value=0.062 Score=33.03 Aligned_cols=86 Identities=26% Similarity=0.198 Sum_probs=46.2
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33799863376469999999997199789993163468999999998678983899862134444210155543210221
Q gi|254780991|r 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248 (805)
Q Consensus 169 ~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p~~d~~i~k~ 248 (805)
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~---------------------~~l~~~~~kV~lI--------------T~Dty---- 251 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAAR---------------------YALEEGKDKVALI--------------TLDTY---- 251 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH---------------------HHHHCCCCEEEEE--------------EECCC----
T ss_conf 36999888887567699999999---------------------9997299817999--------------83767----
Q ss_pred CCCCHHHHHHHHHHHHHHHC-----CCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCC
Q ss_conf 03588999999999999854-----99849982778961689834772257999419811
Q gi|254780991|r 249 SSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303 (805)
Q Consensus 249 ~s~n~~i~~~R~~a~~~l~~-----~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~ 303 (805)
T Consensus 252 ----------RigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~ 301 (412)
T PRK05703 252 ----------RIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQ 301 (412)
T ss_pred ----------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ----------77799999999997197379847999999999871589979996898897