HHsearch alignment for GI: 254780991 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=91.63 E-value=0.68 Score=25.25 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH--HHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 38999999998--873973379986337646999999999---71997899931634689999999986789
Q gi|254780991|r 153 QPAAIAQLLKG--IHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 153 Q~~Ai~~L~~~--l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
T Consensus 85 ~~~~i~~La~~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-----~~~L~~~L~~a~~~ 150 (258)
T PRK09183 85 PQKQLQSLRSLSFIERN-ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQ 150 (258)
T ss_pred CHHHHHHHHCCCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC
T ss_conf 38999988258166558-86799899998689999999999998799399978-----99999999999876