HHsearch alignment for GI: 254780991 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=91.57  E-value=1  Score=23.87  Aligned_cols=111  Identities=13%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             HHHHH-HHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCEEEE
Q ss_conf             99999-98873973379986337646999999999----71997899931634689999999986-------78983899
Q gi|254780991|r  157 IAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNF-------FPHNAVEY  224 (805)
Q Consensus       157 i~~L~-~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~-------Fp~n~V~~  224 (805)
T Consensus        13 LD~iL~GGlp~g-~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~-~~l~~~~~~~g~~~~~~~~~~~l~i   90 (501)
T PRK09302         13 FDDITNGGLPKG-RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESP-EDIIRNVASFGWDLQKLIDEGKLFI   90 (501)
T ss_pred             HHHHHCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHCCCCHHHHHHCCCEEE
T ss_conf             577854898899-77999838999999999999999988559978999857999-9999999984998689732683899


Q ss_pred             EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHHHC
Q ss_conf             86213444421015554321022103588999999999999854-99849982778961
Q gi|254780991|r  225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIY  282 (805)
Q Consensus       225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSAIf  282 (805)
T Consensus        91 ~d~~~~---~~~~~-------~---~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~  136 (501)
T PRK09302         91 LDASPD---PSEQE-------E---AGEYDLSALIERIEYAIRKIKAKRVVIDSIEALF  136 (501)
T ss_pred             EECCCC---CCCCC-------C---CCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf             961567---43111-------3---3447689999999999997199999999978998