HHsearch alignment for GI: 254780991 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=91.57 E-value=1 Score=23.87 Aligned_cols=111 Identities=13% Similarity=0.287 Sum_probs=59.5
Q ss_pred HHHHH-HHHHCCCCEEEEEEECCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCEEEE
Q ss_conf 99999-98873973379986337646999999999----71997899931634689999999986-------78983899
Q gi|254780991|r 157 IAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYSEFKNF-------FPHNAVEY 224 (805)
Q Consensus 157 i~~L~-~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~gr~aLvLvPei~La~QL~~rfk~~-------Fp~n~V~~ 224 (805)
T Consensus 13 LD~iL~GGlp~g-~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~-~~l~~~~~~~g~~~~~~~~~~~l~i 90 (501)
T PRK09302 13 FDDITNGGLPKG-RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESP-EDIIRNVASFGWDLQKLIDEGKLFI 90 (501)
T ss_pred HHHHHCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHCCCCHHHHHHCCCEEE
T ss_conf 577854898899-77999838999999999999999988559978999857999-9999999984998689732683899
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHHHC
Q ss_conf 86213444421015554321022103588999999999999854-99849982778961
Q gi|254780991|r 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIY 282 (805)
Q Consensus 225 f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~-~~~~IVVgsrSAIf 282 (805)
T Consensus 91 ~d~~~~---~~~~~-------~---~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~ 136 (501)
T PRK09302 91 LDASPD---PSEQE-------E---AGEYDLSALIERIEYAIRKIKAKRVVIDSIEALF 136 (501)
T ss_pred EECCCC---CCCCC-------C---CCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 961567---43111-------3---3447689999999999997199999999978998