HHsearch alignment for GI: 254780991 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=100.00 E-value=3.9e-31 Score=251.78 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=115.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
T Consensus 245 ~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyD--- 321 (457)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE--- 321 (457)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC---
T ss_conf 66335884119999999999855699823232478999999999999869982999577011556635688799938---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6744460137766543127-998669998248988999999987888888887
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLE 713 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~ 713 (805)
T Consensus 322 --~P~~~e~YvHRiGRTGRaG~~G~ait~---v~~~e~~~~~~ie~~~~~~~~ 369 (457)
T PRK10590 322 --LPNVPEDYVHRIGRTGRAAATGEALSL---VCVDEHKLLRDIEKLLKKEIP 369 (457)
T ss_pred --CCCCHHHEECCCCCCCCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCCC
T ss_conf --999744500226706058995369998---668999999999999779887