HHsearch alignment for GI: 254780991 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=95.10 E-value=0.053 Score=33.54 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEE-
Q ss_conf 438999999998873973379986337646999999999----71---9978999316346899999999867898389-
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE- 223 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~- 223 (805)
T Consensus 200 ~Qr~Av-------i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~ 272 (684)
T PRK11054 200 SQARAV-------VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred HHHHHE-------EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999572-------7479964898338997077999999999975999866778686349999999999997549998378
Q ss_pred -EEEEC
Q ss_conf -98621
Q gi|254780991|r 224 -YFVSY 228 (805)
Q Consensus 224 -~f~S~ 228 (805)
T Consensus 273 ~TFHSl 278 (684)
T PRK11054 273 RTFHAL 278 (684)
T ss_pred EEHHHH
T ss_conf 659999