HHsearch alignment for GI: 254780991 and conserved domain: PRK11054

>PRK11054 helD DNA helicase IV; Provisional.
Probab=95.10  E-value=0.053  Score=33.54  Aligned_cols=70  Identities=19%  Similarity=0.228  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH----HC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEE-
Q ss_conf             438999999998873973379986337646999999999----71---9978999316346899999999867898389-
Q gi|254780991|r  152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE-  223 (805)
Q Consensus       152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~----~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~-  223 (805)
T Consensus       200 ~Qr~Av-------i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~  272 (684)
T PRK11054        200 SQARAV-------VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITA  272 (684)
T ss_pred             HHHHHE-------EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999572-------7479964898338997077999999999975999866778686349999999999997549998378


Q ss_pred             -EEEEC
Q ss_conf             -98621
Q gi|254780991|r  224 -YFVSY  228 (805)
Q Consensus       224 -~f~S~  228 (805)
T Consensus       273 ~TFHSl  278 (684)
T PRK11054        273 RTFHAL  278 (684)
T ss_pred             EEHHHH
T ss_conf             659999