HHsearch alignment for GI: 254780991 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=99.28 E-value=1.7e-08 Score=82.19 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=90.7
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC--CCCEEEEECC------HHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 99999887397337998633764699999999971--9978999316------346899999999867898389986213
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPN------KILAAQLYSEFKNFFPHNAVEYFVSYY 229 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~--gr~aLvLvPe------i~La~QL~~rfk~~Fp~n~V~~f~S~~ 229 (805)
T Consensus 80 ~~i~~~i~~n-qVvii~GeTGsGKTTQiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~-~VGY~VRf~ 157 (1295)
T PRK11131 80 QDILEAIRDH-QVVIVAGETGSGKTTQLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETELGG-CVGYKVRFN 157 (1295)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf 9999999979-96999768999878899999996279999989977965999999999999981999899-888894569
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC--CCCH-HHHHCCEEEEECCCCCCHH
Q ss_conf 444421015554321022103588999999999999854998499827789616--8983-4772257999419811178
Q gi|254780991|r 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--IGSV-ESYSQMIVQLKIGDSVEQK 306 (805)
Q Consensus 230 ~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfg--l~~P-~~~lglIIvdEehd~~~~~ 306 (805)
T Consensus 158 ~~~s~-----------------------------------~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~ 202 (1295)
T PRK11131 158 DQVSD-----------------------------------NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI 202 (1295)
T ss_pred CCCCC-----------------------------------CCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHH
T ss_conf 88799-----------------------------------9779997656999986209987887779986855688019
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 75323431176563387754533187247831788877888
Q gi|254780991|r 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347 (805)
Q Consensus 307 ~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~ 347 (805)
T Consensus 203 D~-----LLg~Lk~-ll~~R---~dLKvIimSATid~e~fs 234 (1295)
T PRK11131 203 DF-----ILGYLKE-LLPRR---PDLKVIITSATIDPERFS 234 (1295)
T ss_pred HH-----HHHHHHH-HHHHC---CCCEEEEECCCCCHHHHH
T ss_conf 99-----9999999-98339---998899955868979999