HHsearch alignment for GI: 254780991 and conserved domain: PRK11192

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=100.00  E-value=3e-31  Score=252.58  Aligned_cols=134  Identities=25%  Similarity=0.392  Sum_probs=118.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf             32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r  582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK  661 (805)
Q Consensus       582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~  661 (805)
T Consensus       247 ~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyd---  323 (417)
T PRK11192        247 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHVINFD---  323 (417)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf             66521531124667689886531488357540017999999999999769998999812434677704698899979---


Q ss_pred             CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             6744460137766543127-9986699982489889999999878888888876887188530
Q gi|254780991|r  662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ  723 (805)
Q Consensus       662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~p~  723 (805)
T Consensus       324 --~P~~~~~YvHRiGRTGR~G~~G~ait~---v~~~d~~~~~~ie~~~~~~~~~~~~~~~~~~  381 (417)
T PRK11192        324 --MPRSADTYLHRIGRTGRAGKKGTAISL---VEAHDHLLLGKIERYIEEPLKRRVIDELRPK  381 (417)
T ss_pred             --CCCCHHHHHHHCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             --999888923306772348995489998---7489999999999997798873126886889