HHsearch alignment for GI: 254780991 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=100.00 E-value=3e-31 Score=252.58 Aligned_cols=134 Identities=25% Similarity=0.392 Sum_probs=118.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 32124662147899999999863596687325764578999999997318986999845875357877711799962885
Q gi|254780991|r 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 (805)
Q Consensus 582 ~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~ 661 (805)
T Consensus 247 ~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyd--- 323 (417)
T PRK11192 247 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHVINFD--- 323 (417)
T ss_pred CCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEEC---
T ss_conf 66521531124667689886531488357540017999999999999769998999812434677704698899979---
Q ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6744460137766543127-9986699982489889999999878888888876887188530
Q gi|254780991|r 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 (805)
Q Consensus 662 ~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~~~n~~~~i~p~ 723 (805)
T Consensus 324 --~P~~~~~YvHRiGRTGR~G~~G~ait~---v~~~d~~~~~~ie~~~~~~~~~~~~~~~~~~ 381 (417)
T PRK11192 324 --MPRSADTYLHRIGRTGRAGKKGTAISL---VEAHDHLLLGKIERYIEEPLKRRVIDELRPK 381 (417)
T ss_pred --CCCCHHHHHHHCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf --999888923306772348995489998---7489999999999997798873126886889