HHsearch alignment for GI: 254780991 and conserved domain: PRK11448

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.64  E-value=6.1e-14  Score=122.97  Aligned_cols=123  Identities=21%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             43899999999887397337998633764699999999971-----9978999316346899999999867898389986
Q gi|254780991|r  152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV  226 (805)
Q Consensus       152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~  226 (805)
T Consensus       420 YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~-~~~  498 (1126)
T PRK11448        420 YQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQ-TFA  498 (1126)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCC-CCC
T ss_conf             8999999999999809854688724888589899999999996587672579856589999999987543454566-640


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC--------CCHHHHHCCEEEEE
Q ss_conf             2134444210155543210221035889999999999998549984998277896168--------98347722579994
Q gi|254780991|r  227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI--------GSVESYSQMIVQLK  298 (805)
Q Consensus       227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl--------~~P~~~lglIIvdE  298 (805)
T Consensus       499 ~~~~v---------------~~l~-------------~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDE  550 (1126)
T PRK11448        499 SIYDI---------------KGLT-------------DKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDE  550 (1126)
T ss_pred             HHHHH---------------HHCC-------------CCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf             02200---------------1025-------------6787877719997307899875235767799998513798977


Q ss_pred             CCCCC
Q ss_conf             19811
Q gi|254780991|r  299 IGDSV  303 (805)
Q Consensus       299 ehd~~  303 (805)
T Consensus       551 aHRgy  555 (1126)
T PRK11448        551 AHRGY  555 (1126)
T ss_pred             CCCCC
T ss_conf             87887