HHsearch alignment for GI: 254780991 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.64 E-value=6.1e-14 Score=122.97 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 43899999999887397337998633764699999999971-----9978999316346899999999867898389986
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~-----gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
T Consensus 420 YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~-~~~ 498 (1126)
T PRK11448 420 YQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQ-TFA 498 (1126)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCC-CCC
T ss_conf 8999999999999809854688724888589899999999996587672579856589999999987543454566-640
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC--------CCHHHHHCCEEEEE
Q ss_conf 2134444210155543210221035889999999999998549984998277896168--------98347722579994
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI--------GSVESYSQMIVQLK 298 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl--------~~P~~~lglIIvdE 298 (805)
T Consensus 499 ~~~~v---------------~~l~-------------~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDE 550 (1126)
T PRK11448 499 SIYDI---------------KGLT-------------DKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDE 550 (1126)
T ss_pred HHHHH---------------HHCC-------------CCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf 02200---------------1025-------------6787877719997307899875235767799998513798977
Q ss_pred CCCCC
Q ss_conf 19811
Q gi|254780991|r 299 IGDSV 303 (805)
Q Consensus 299 ehd~~ 303 (805)
T Consensus 551 aHRgy 555 (1126)
T PRK11448 551 AHRGY 555 (1126)
T ss_pred CCCCC
T ss_conf 87887