HHsearch alignment for GI: 254780991 and conserved domain: PRK11664

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.36  E-value=2.7e-09  Score=88.11  Aligned_cols=87  Identities=23%  Similarity=0.254  Sum_probs=69.4

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC-------CC------CCCCHHHH
Q ss_conf             596687325764578999999997318986999845875357877711799962885-------67------44460137
Q gi|254780991|r  605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EG------FLRSKTSL  671 (805)
Q Consensus       605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~-------~~------f~~~~~~~  671 (805)
T Consensus       238 ~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~iSkasa  317 (812)
T PRK11664        238 SDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQRISQASM  317 (812)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEECCHHHH
T ss_conf             78089964478998898776067999953799950200020201781489740223443234357975676770454435


Q ss_pred             HHHHHHHCCCCCCEEE-EEEC
Q ss_conf             7665431279986699-9824
Q gi|254780991|r  672 IQTIGRAARNVNSKVI-LYAD  691 (805)
Q Consensus       672 ~q~~GRagR~~~G~~i-l~ad  691 (805)
T Consensus       318 ~QRaGRAGR~~pG~cyRL~s~  338 (812)
T PRK11664        318 TQRAGRAGRLEPGICLHLYAK  338 (812)
T ss_pred             HCCCCCCCCCCCCEEEEEECH
T ss_conf             313676788899707873359