HHsearch alignment for GI: 254780991 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.36 E-value=2.7e-09 Score=88.11 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCC-------CC------CCCCHHHH
Q ss_conf 596687325764578999999997318986999845875357877711799962885-------67------44460137
Q gi|254780991|r 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EG------FLRSKTSL 671 (805)
Q Consensus 605 ~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~-------~~------f~~~~~~~ 671 (805)
T Consensus 238 ~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 238 SDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQRISQASM 317 (812)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEECCHHHH
T ss_conf 78089964478998898776067999953799950200020201781489740223443234357975676770454435
Q ss_pred HHHHHHHCCCCCCEEE-EEEC
Q ss_conf 7665431279986699-9824
Q gi|254780991|r 672 IQTIGRAARNVNSKVI-LYAD 691 (805)
Q Consensus 672 ~q~~GRagR~~~G~~i-l~ad 691 (805)
T Consensus 318 ~QRaGRAGR~~pG~cyRL~s~ 338 (812)
T PRK11664 318 TQRAGRAGRLEPGICLHLYAK 338 (812)
T ss_pred HCCCCCCCCCCCCEEEEEECH
T ss_conf 313676788899707873359