HHsearch alignment for GI: 254780991 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=100.00 E-value=1e-31 Score=256.04 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=114.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660 (805)
Q Consensus 581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD 660 (805)
T Consensus 241 ~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VInyD-- 318 (459)
T PRK11776 241 RPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVINYE-- 318 (459)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEEC--
T ss_conf 876603761748999999999986799689987999999999999999779997998810434767713598899978--
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL 712 (805)
Q Consensus 661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~ 712 (805)
T Consensus 319 ---lP~~~e~YvHRiGRTGRaG~~G~ait~---vt~~e~~~l~~ie~~~~~~i 365 (459)
T PRK11776 319 ---LARDPEVHVHRIGRTGRAGSKGLALSL---VAPEEMQRAAAIEDYLGRKL 365 (459)
T ss_pred ---CCCCHHHHHHCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf ---989745520205251378996579999---86899999999999978998