HHsearch alignment for GI: 254780991 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=100.00  E-value=1e-31  Score=256.04  Aligned_cols=124  Identities=15%  Similarity=0.230  Sum_probs=114.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCC
Q ss_conf             23212466214789999999986359668732576457899999999731898699984587535787771179996288
Q gi|254780991|r  581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD  660 (805)
Q Consensus       581 ~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD  660 (805)
T Consensus       241 ~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VInyD--  318 (459)
T PRK11776        241 RPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVINYE--  318 (459)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEEC--
T ss_conf             876603761748999999999986799689987999999999999999779997998810434767713598899978--


Q ss_pred             CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             56744460137766543127-99866999824898899999998788888888
Q gi|254780991|r  661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL  712 (805)
Q Consensus       661 ~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rrr~~q~  712 (805)
T Consensus       319 ---lP~~~e~YvHRiGRTGRaG~~G~ait~---vt~~e~~~l~~ie~~~~~~i  365 (459)
T PRK11776        319 ---LARDPEVHVHRIGRTGRAGSKGLALSL---VAPEEMQRAAAIEDYLGRKL  365 (459)
T ss_pred             ---CCCCHHHHHHCCCHHHCCCCCEEEEEE---ECHHHHHHHHHHHHHHCCCC
T ss_conf             ---989745520205251378996579999---86899999999999978998