HHsearch alignment for GI: 254780991 and conserved domain: PRK11784
>PRK11784 tRNA 2-selenouridine synthase; Provisional.
Probab=95.13 E-value=0.036 Score=34.82 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 99999887397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 158 ~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
T Consensus 129 ~~v~~~l~~--~~~vl~G~TG~GKT~lL-~~L~~~G~~viDL-------EglA~HRGS~FG~ 180 (333)
T PRK11784 129 RFVIDTLEE--PLVVLGGMTGSGKTRLL-QALANAGAQVLDL-------EGLANHRGSSFGR 180 (333)
T ss_pred HHHHHHHCC--CCEEEECCCCCCHHHHH-HHHHHCCCCEECH-------HHHHHCCCCCCCC
T ss_conf 999998546--85998678887789999-9999759974338-------9886325642358